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contig_metadata

22 rows where bioproject = "PRJNA597223", tax_kingdom = "Pseudomonadati" and tax_phylum = "Myxococcota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 22 ✖

tax_kingdom 1

  • Pseudomonadati · 22 ✖

bioproject 1

  • PRJNA597223 · 22 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2416209 2416209 PRJNA597223_P_NODE_8922_length_582_cov_186.881170_g7352_i0 PRJNA597223 8922 582 186.88117 1087.6484094 Myxococcia 32015 Bacteria Bacteria 863 0   NTclustered gi|913610804|gb|CP012333.1| 1391654 g7352 i0 93.46 137.798969072165 581 38 99 0 1 581 7089725 7090305 Labilithrix luteola strain DSM 27648, complete genome blastn 80199 863 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
10773198 10773198 PRJNA597223_P_NODE_21369_length_346_cov_4.877814_g19530_i0 PRJNA597223 21369 346 4.877814 16.87723644 Labilithrix luteola 1391654 Bacteria Bacteria 446 1.29e-120   NTclustered gi|913610804|gb|CP012333.1| 1391654 g19530 i0 89.943 201.384393063584 348 31 100 4 1 346 3942296 3941951 Labilithrix luteola strain DSM 27648, complete genome blastn 69679 446 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
12619934 12619934 PRJNA597223_P_NODE_9670_length_558_cov_10.074570_g8042_i0 PRJNA597223 9670 558 10.07457 56.2161006 Pendulispora 3375062 Bacteria Bacteria 839 0   NTclustered gi|2698045512|gb|CP089929.1| 2741070 g8042 i0 93.907 171.584229390681 558 30 100 3 1 558 7288976 7289529 Pendulispora rubella strain MSr11368 chromosome, complete genome blastn 95744 839 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora rubella
14598151 14598151 PRJNA597223_P_NODE_56152_length_188_cov_2.241830_g54306_i0 PRJNA597223 56152 188 2.24183 4.2146404 Polyangium aurulentum 2567896 Bacteria Bacteria 159 9.229999999999999e-35   NTclustered gi|2235996827|gb|CP079217.1| 2567896 g54306 i0 94.286 7.88297872340426 105 4 92 2 1 104 443064 443167 Polyangium aurulentum strain SDU3-1 chromosome, complete genome blastn 1482 159 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Polyangium Polyangium aurulentum
16443487 16443487 PRJNA597223_P_NODE_55693_length_188_cov_669.947712_g53847_i0 PRJNA597223 55693 188 669.947712 1259.50169856 Pendulispora 3375062 Bacteria Bacteria 257 3.1800000000000004e-64   NTclustered gi|2698045512|gb|CP089929.1| 2741070 g53847 i0 91.444 557.574468085106 187 16 99 0 1 187 7289010 7288824 Pendulispora rubella strain MSr11368 chromosome, complete genome blastn 104824 257 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora rubella
17146693 17146693 PRJNA597223_P_NODE_34254_length_250_cov_7.395349_g32408_i0 PRJNA597223 34254 250 7.395349 18.4883725 Pendulispora albinea 2741071 Bacteria Bacteria 255 1.61e-63   NTclustered gi|2698035964|gb|CP089984.1| 2741071 g32408 i0 85.433 52.936 254 27 99 9 1 248 3589471 3589222 Pendulispora albinea strain MSr11954 chromosome, complete genome blastn 13234 255 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora albinea
17146807 17146807 PRJNA597223_P_NODE_43794_length_213_cov_6.280899_g41948_i0 PRJNA597223 43794 213 6.280899 13.37831487 Labilithrix luteola 1391654 Bacteria Bacteria 333 5.979999999999998e-87   NTclustered gi|913610804|gb|CP012333.1| 1391654 g41948 i0 94.836 148.112676056338 213 11 100 0 1 213 3943857 3944069 Labilithrix luteola strain DSM 27648, complete genome blastn 31548 333 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
22246378 22246378 PRJNA597223_P_NODE_5418_length_749_cov_143.446779_g4152_i0 PRJNA597223 5418 749 143.446779 1074.41637471 Labilithrix luteola 1391654 Bacteria Bacteria 1114 0   NTclustered gi|913610804|gb|CP012333.1| 1391654 g4152 i0 93.583 142.069425901202 748 46 99 2 2 748 7089559 7090305 Labilithrix luteola strain DSM 27648, complete genome blastn 106410 1114 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
22817831 22817831 PRJNA597223_P_NODE_1838_length_1249_cov_273.705107_g1198_i0 PRJNA597223 1838 1249 273.705107 3418.57678643 Haliangium 162027 Bacteria Bacteria 1170 0   NTclustered gi|470485361|ref|NR_076697.1| 80816 g1198 i0 83.797 155.436349079263 1259 177 99 23 5 1249 1776 531 Haliangium ochraceum strain SMP-2 23S ribosomal RNA gene, complete sequence blastn 194140 1170 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae Haliangium Haliangium ochraceum
23521640 23521640 PRJNA597223_P_NODE_6279_length_695_cov_155.963636_g4910_i0 PRJNA597223 6279 695 155.963636 1083.9472702 Pendulispora brunnea 2905690 Bacteria Bacteria 957 0   NTclustered gi|2698055994|gb|CP089982.1| 2905690 g4910 i0 92.782 137.174100719424 665 42 95 6 1 662 7408722 7408061 Pendulispora brunnea strain MSr12523 chromosome, complete genome blastn 95336 957 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora brunnea
24795205 24795205 PRJNA597223_P_NODE_42640_length_217_cov_2.461538_g40794_i0 PRJNA597223 42640 217 2.461538 5.34153746 Nannocystis exedens 54 Bacteria Bacteria 368 1.68e-97   NTclustered gi|2244669|emb|X87286.1| 54 g40794 i0 97.235 114.884792626728 217 6 100 0 1 217 1343 1127 N.exedens 23S rRNA gene blastn 24930 368 1 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae Nannocystis Nannocystis exedens
27111289 27111289 PRJNA597223_P_NODE_26922_length_297_cov_2.301527_g25076_i0 PRJNA597223 26922 297 2.301527 6.83553519 Myxococcales bacterium 2026763 Bacteria Bacteria 46.2 0.00203   NR MCA9527719.1 2026763 g25076 i0 40.8 1.12121212121212 49 29 49.5 0 32 178 106 154 MCA9527719.1 lipocalin family protein [Myxococcales bacterium] diamond 333 46.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
27174436 27174436 PRJNA597223_P_NODE_72362_length_167_cov_2.000000_g70516_i0 PRJNA597223 72362 167 2 3.34 Polyangiales bacterium 3034171 Bacteria Bacteria 45.1 0.002   NR HTU61472.1 3034171 g70516 i0 38.8 0.880239520958084 49 30 88 0 16 162 153 201 HTU61472.1 hypothetical protein [Polyangiales bacterium] diamond 147 45.1 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales     Polyangiales bacterium
27301168 27301168 PRJNA597223_P_NODE_47483_length_203_cov_2.738095_g45637_i0 PRJNA597223 47483 203 2.738095 5.55833285 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 82 3.13e-16   NR MDD9853257.1 2026735 g45637 i0 65.6 5.30541871921182 61 21 90.1 0 19 201 493 553 MDD9853257.1 reverse transcriptase [Deltaproteobacteria bacterium] diamond 1077 82 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
28311644 28311644 PRJNA597223_P_NODE_54066_length_190_cov_1.961290_g52220_i0 PRJNA597223 54066 190 1.96129 3.726451 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 40.8 0.0188   NR MBI5517049.1 2026735 g52220 i0 66.7 0.378947368421053 24 8 37.9 0 5 76 15 38 MBI5517049.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 72 40.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
29416503 29416503 PRJNA597223_P_NODE_22889_length_331_cov_3.972973_g21046_i0 PRJNA597223 22889 331 3.972973 13.15054063 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 145 1.25e-37   NR MBN8536083.1 2026735 g21046 i0 73.6 2.99093655589124 110 29 99.7 0 2 331 386 495 MBN8536083.1 ATP-dependent chaperone ClpB [Deltaproteobacteria bacterium] diamond 990 145 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
29556140 29556140 PRJNA597223_P_NODE_69750_length_171_cov_1.705882_g67904_i0 PRJNA597223 69750 171 1.705882 2.91705822 Pseudomonadati 3379134 Bacteria Bacteria 102 1.0199999999999999e-23   NR WP_050430577.1 52 g67904 i0 76.7 5.26315789473684 60 11 100 1 171 1 490 549 WP_050430577.1 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase [Chondromyces crocatus] diamond 900 103 0.990291262135922 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Chondromyces Chondromyces crocatus
29763773 29763773 PRJNA597223_P_NODE_69691_length_171_cov_1.911765_g67845_i0 PRJNA597223 69691 171 1.911765 3.26911815 Myxococcota bacterium 2818507 Bacteria Bacteria 73.2 6.51e-14   NR HVH07384.1 2818507 g67845 i0 65.4 0.912280701754386 52 18 91.2 0 160 5 20 71 HVH07384.1 helix-turn-helix domain-containing protein [Myxococcota bacterium] diamond 156 73.2 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
31153720 31153720 PRJNA597223_P_NODE_72755_length_167_cov_1.000000_g70909_i0 PRJNA597223 72755 167 1 1.67 Myxococcaceae bacterium 2484252 Bacteria Bacteria 84.3 2.84e-17   NR MER2562634.1 2484252 g70909 i0 74.1 0.970059880239521 54 14 97 0 1 162 413 466 MER2562634.1 IS21 family transposase [Myxococcaceae bacterium] diamond 162 84.3 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae   Myxococcaceae bacterium
31470503 31470503 PRJNA597223_P_NODE_65616_length_178_cov_1.664336_g63770_i0 PRJNA597223 65616 178 1.664336 2.96251808 Sandaracinaceae bacterium 2510337 Bacteria Bacteria 89 4.24e-20   NR MCS6856218.1 2510337 g63770 i0 66.1 1.98876404494382 59 20 99.4 0 177 1 112 170 MCS6856218.1 peroxiredoxin [Sandaracinaceae bacterium] diamond 354 89 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Sandaracinaceae   Sandaracinaceae bacterium
32293216 32293216 PRJNA597223_P_NODE_40879_length_223_cov_2.287234_g39033_i0 PRJNA597223 40879 223 2.287234 5.10053182 Archangium lipolyticum 2970465 Bacteria Bacteria 56.2 3.26e-7   NR WP_257447582.1 2970465 g39033 i0 54 0.672645739910314 50 18 60.5 1 87 221 1 50 WP_257447582.1 beta-ketoacyl synthase chain length factor [Archangium lipolyticum] diamond 150 56.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium lipolyticum
32577701 32577701 PRJNA597223_P_NODE_30279_length_274_cov_1.062762_g28433_i0 PRJNA597223 30279 274 1.062762 2.91196788 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 44.3 0.00208   NR RYF12390.1 2026735 g28433 i0 50 0.45985401459854 42 21 46 0 107 232 26 67 RYF12390.1 MAG: membrane protein insertion efficiency factor YidD [Deltaproteobacteria bacterium] diamond 126 44.3 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;