RNAquarium Metadata Server
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contig_metadata

10 rows where bioproject = "PRJNA597223", tax_kingdom = "Bacillati" and tax_phylum = "Armatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 10 ✖

tax_kingdom 1

  • Bacillati · 10 ✖

bioproject 1

  • PRJNA597223 · 10 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3692146 3692146 PRJNA597223_P_NODE_35703_length_243_cov_11.177885_g33857_i0 PRJNA597223 35703 243 11.177885 27.16226055 Fimbriimonas 1005038 Bacteria Bacteria 196 9.56e-46   NTclustered gi|663071213|gb|CP007139.1| 661478 g33857 i0 81.857 200.950617283951 237 39 97 4 9 243 29785 29551 Fimbriimonas ginsengisoli Gsoil 348, complete genome blastn 48831 196 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli
5672829 5672829 PRJNA597223_P_NODE_36425_length_240_cov_4.112195_g34579_i0 PRJNA597223 36425 240 4.112195 9.869268 Armatimonadetes bacterium Uphvl-Ar2 2004468 Bacteria Bacteria 196 9.42e-46   NTclustered gi|1199101103|gb|CP021424.1| 2004468 g34579 i0 83.645 0.891666666666667 214 29 88 6 1 211 2201002 2200792 Armatimonadetes bacterium Uphvl-Ar2 genome blastn 214 196 1 Bacteria   Bacillati Armatimonadota         Armatimonadetes bacterium Uphvl-Ar2
6244300 6244300 PRJNA597223_P_NODE_3925_length_876_cov_18.745541_g728_i4 PRJNA597223 3925 876 18.745541 164.21093916 Fimbriimonas 1005038 Bacteria Bacteria 1273 0   NTclustered gi|663071213|gb|CP007139.1| 661478 g728 i4 92.947 212.461187214612 879 54 100 7 1 876 29173 28300 Fimbriimonas ginsengisoli Gsoil 348, complete genome blastn 186116 1273 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli
10069278 10069278 PRJNA597223_P_NODE_3588_length_910_cov_12.955429_g728_i3 PRJNA597223 3588 910 12.955429 117.8944039 Fimbriimonas 1005038 Bacteria Bacteria 1297 0   NTclustered gi|663071213|gb|CP007139.1| 661478 g728 i3 92.426 254.921978021978 911 65 100 3 1 910 29207 28300 Fimbriimonas ginsengisoli Gsoil 348, complete genome blastn 231979 1297 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli
10773155 10773155 PRJNA597223_P_NODE_16589_length_407_cov_4.435484_g14783_i0 PRJNA597223 16589 407 4.435484 18.05241988 Armatimonadota bacterium 2033014 Bacteria Bacteria 316 1.25e-81   NTclustered gi|1493551556|dbj|LC378776.1| 2033014 g14783 i0 93.119 57.2334152334152 218 11 53 4 1 216 1025 1240 Armatimonadetes bacterium LA-DMC-2W6 gene for 16S ribosomal RNA, partial sequence blastn 23294 316 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
12619679 12619679 PRJNA597223_P_NODE_1170_length_1512_cov_93.716317_g728_i0 PRJNA597223 1170 1512 93.716317 1416.99071304 Fimbriimonas 1005038 Bacteria Bacteria 1282 0   NTclustered gi|663071213|gb|CP007139.1| 661478 g728 i0 91.004 474.580026455026 956 78 63 6 560 1512 29250 28300 Fimbriimonas ginsengisoli Gsoil 348, complete genome blastn 717565 1282 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli
17146863 17146863 PRJNA597223_P_NODE_48374_length_201_cov_2.084337_g46528_i0 PRJNA597223 48374 201 2.084337 4.18951737 uncultured Armatimonadetes bacterium 157466 Bacteria Bacteria 191 3.55e-44   NTclustered gi|2874254000|emb|OY970325.1| 157466 g46528 i0 83.744 562.63184079602 203 31 100 2 1 201 1304705 1304503 MAG: uncultured Armatimonadetes bacterium isolate MFD05942.bin.1.84 genome assembly, chromosome: 1 blastn 113089 191 1 Bacteria   Bacillati Armatimonadota         uncultured Armatimonadetes bacterium
19695825 19695825 PRJNA597223_P_NODE_69896_length_171_cov_1.316176_g68050_i0 PRJNA597223 69896 171 1.316176 2.25066096 uncultured Armatimonadetes bacterium 157466 Bacteria Bacteria 158 2.9499999999999992e-34   NTclustered gi|2874254000|emb|OY970325.1| 157466 g68050 i0 83.429 86.8654970760234 175 24 100 5 1 171 1306148 1306321 MAG: uncultured Armatimonadetes bacterium isolate MFD05942.bin.1.84 genome assembly, chromosome: 1 blastn 14854 158 1 Bacteria   Bacillati Armatimonadota         uncultured Armatimonadetes bacterium
22817946 22817946 PRJNA597223_P_NODE_5178_length_766_cov_13.068399_g728_i5 PRJNA597223 5178 766 13.068399 100.10393634 Fimbriimonas 1005038 Bacteria Bacteria 985 0   NTclustered gi|663071213|gb|CP007139.1| 661478 g728 i5 90 170.083550913838 770 66 100 8 1 766 28089 28851 Fimbriimonas ginsengisoli Gsoil 348, complete genome blastn 130284 985 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli
26795051 26795051 PRJNA597223_P_NODE_50721_length_196_cov_1.490683_g48875_i0 PRJNA597223 50721 196 1.490683 2.92173868 Fimbriimonas sp. 1936159 Bacteria Bacteria 90.1 1.89e-19   NR HEY0866811.1 1936159 g48875 i0 65.6 1.95918367346939 64 22 98 0 1 192 165 228 HEY0866811.1 DNA polymerase III subunit delta [Fimbriimonas sp.] diamond 384 90.1 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;