RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA597223", tax_clade = "ant, tsetse, mealybug, aphid, etc. endosymbionts" and tax_phylum = "Pseudomonadota"

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tax_superkingdom 1

tax_phylum 1

  • Pseudomonadota · 2 ✖

tax_kingdom 1

tax_clade 1

  • ant, tsetse, mealybug, aphid, etc. endosymbionts · 2 ✖

bioproject 1

  • PRJNA597223 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14597986 14597986 PRJNA597223_P_NODE_42232_length_218_cov_4.923497_g40386_i0 PRJNA597223 42232 218 4.923497 10.73322346 secondary endosymbiont of Bactericera cockerelli 126159 Bacteria Bacteria 108 4.06e-19   NTclustered gi|8575697|gb|AF263557.1| 126159 g40386 i0 85.047 2.3348623853211 107 14 49 2 113 218 2809 2704 Secondary endosymbiont of Bactericera cockerelli 16S ribosomal RNA gene, partial sequence; intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 509 108 1 Bacteria ant, tsetse, mealybug, aphid, etc. endosymbionts Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae   secondary endosymbiont of Bactericera cockerelli
22246257 22246257 PRJNA597223_P_NODE_44758_length_211_cov_1.147727_g42912_i0 PRJNA597223 44758 211 1.147727 2.42170397 Candidatus Williamhamiltonella defendens 138072 Bacteria Bacteria 52.8 0.019   NTclustered gi|1440888299|gb|MH047297.1| 138072 g42912 i0 92.105 0.180094786729858 38 1 18 2 2 38 834 798 Candidatus Hamiltonella defensa isolate 153_2_MEAM1 chaperonin GroL gene, complete cds blastn 38 52.8 1 Bacteria ant, tsetse, mealybug, aphid, etc. endosymbionts Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Candidatus Williamhamiltonella Candidatus Williamhamiltonella defendens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;