RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA597223" and tax_clade = "CRuMs"

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tax_superkingdom 1

tax_clade 1

  • CRuMs · 2 ✖

bioproject 1

  • PRJNA597223 · 2 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9497356 9497356 PRJNA597223_P_NODE_28528_length_285_cov_3.336000_g26682_i0 PRJNA597223 28528 285 3.336 9.5076 Diphylleia rotans 190327 Root_unresolved Root_unresolved 97.1 1.2e-15   NTclustered gi|1200177731|gb|MF039365.1| 190327 g26682 i0 92.537 24.5263157894737 67 5 24 0 192 258 4319 4253 Diphylleia rotans isolate D_NIES3764 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 6990 97.1 1 Eukaryota CRuMs         Collodictyonidae Diphylleia Diphylleia rotans
15168818 15168818 PRJNA597223_P_NODE_32032_length_262_cov_161.651982_g30186_i0 PRJNA597223 32032 262 161.651982 423.52819284 Collodictyon 190324 Root_unresolved Root_unresolved 124 4.989999999999999e-24   NTclustered gi|1200177725|gb|MF039359.1| 190325 g30186 i0 87.273 5.06488549618321 110 13 42 1 30 138 2270 2379 Collodictyon triciliatum isolate C_KIVT04 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 1327 124 1 Eukaryota CRuMs         Collodictyonidae Collodictyon Collodictyon triciliatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;