RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA597223", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Minisyncoccota"

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tax_superkingdom 1

tax_phylum 1

  • Minisyncoccota · 3 ✖

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA597223 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27459218 27459218 PRJNA597223_P_NODE_84863_length_153_cov_0.940678_g83017_i0 PRJNA597223 84863 153 0.940678 1.43923734 Minisyncoccota bacterium 2053589 Bacteria Bacteria 41.6 0.0043   NR MEX0594971.1 2053589 g83017 i0 53.6 0.549019607843137 28 13 54.9 0 54 137 5 32 MEX0594971.1 hypothetical protein [Candidatus Paceibacterota bacterium] diamond 84 41.6 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
29953499 29953499 PRJNA597223_P_NODE_71791_length_168_cov_1.511278_g69945_i0 PRJNA597223 71791 168 1.511278 2.53894704 Minisyncoccota bacterium 2053589 Bacteria Bacteria 75.1 9.85e-16   NR HEY5588396.1 2053589 g69945 i0 72.9 0.857142857142857 48 13 85.7 0 23 166 1 48 HEY5588396.1 VRR-NUC domain-containing protein [Candidatus Paceibacterota bacterium] diamond 144 75.1 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
31881376 31881376 PRJNA597223_P_NODE_75617_length_163_cov_1.492188_g73771_i0 PRJNA597223 75617 163 1.492188 2.43226644 Minisyncoccia bacterium 3120121 Bacteria Bacteria 81.6 3.18e-17   NR MFT5533230.1 3120121 g73771 i0 82.2 4.23312883435583 45 8 82.8 0 135 1 29 73 MFT5533230.1 Fe-Mn family superoxide dismutase [Minisyncoccia bacterium] diamond 690 81.6 1 Bacteria Bacteria candidate phyla   Minisyncoccota Minisyncoccia       Minisyncoccia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;