RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA597223", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Peregrinibacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Candidatus Peregrinibacteriota · 3 ✖

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA597223 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10773476 10773476 PRJNA597223_P_NODE_47429_length_203_cov_3.821429_g45583_i0 PRJNA597223 47429 203 3.821429 7.75750087 Candidatus Peribacteria bacterium 2053688 Bacteria Bacteria 202 1.66e-47   NTclustered gi|2258833497|gb|CP060226.1| 2053688 g45583 i0 85.075 5.60098522167488 201 26 98 4 1 199 813687 813885 MAG: Candidatus Peribacteria bacterium isolate HK-STAS-PATE-10 chromosome, complete genome blastn 1137 202 1 Bacteria Bacteria candidate phyla   Candidatus Peregrinibacteriota Candidatus Peribacteria       Candidatus Peribacteria bacterium
14598286 14598286 PRJNA597223_P_NODE_70512_length_170_cov_1.325926_g68666_i0 PRJNA597223 70512 170 1.325926 2.2540742 Candidatus Peribacteria bacterium 2053688 Bacteria Bacteria 152 1.36e-32   NTclustered gi|2258832001|gb|CP060225.1| 2053688 g68666 i0 83.041 1.00588235294118 171 26 99 3 1 169 627368 627199 MAG: Candidatus Peribacteria bacterium isolate HK-STAS-PATE-9 chromosome, complete genome blastn 171 152 1 Bacteria Bacteria candidate phyla   Candidatus Peregrinibacteriota Candidatus Peribacteria       Candidatus Peribacteria bacterium
30111375 30111375 PRJNA597223_P_NODE_41632_length_220_cov_4.162162_g39786_i0 PRJNA597223 41632 220 4.162162 9.1567564 Candidatus Peregrinibacteria bacterium GW2 2030811 Bacteria Bacteria 53.1 2.23e-6   NR KKT76633.1 1619057 g39786 i0 60 0.545454545454545 40 16 54.5 0 95 214 120 159 KKT76633.1 MAG: hypothetical protein UW70_C0016G0012 [Candidatus Peregrinibacteria bacterium GW2011_GWA2_44_7] diamond 120 53.1 1 Bacteria Bacteria candidate phyla   Candidatus Peregrinibacteriota         Candidatus Peregrinibacteria bacterium GW2011_GWA2_44_7

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;