RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA597223", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Absconditibacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Candidatus Absconditibacteriota · 3 ✖

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA597223 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2416078 2416078 PRJNA597223_P_NODE_47522_length_203_cov_2.440476_g45676_i0 PRJNA597223 47522 203 2.440476 4.95416628 Bacteria 2 Bacteria Bacteria 141 3.67e-29   NTclustered gi|563351663|gb|CP006913.1| 1394709 g45676 i0 95.455 8.12315270935961 88 4 43 0 2 89 127357 127270 Candidate division SR1 bacterium RAAC1_SR1_1 chromosome, complete genome blastn 1649 141 1 Bacteria Bacteria candidate phyla   Candidatus Absconditibacteriota         candidate division SR1 bacterium RAAC1_SR1_1
28627542 28627542 PRJNA597223_P_NODE_76327_length_162_cov_1.685039_g74481_i0 PRJNA597223 76327 162 1.685039 2.72976318 Candidatus Absconditabacterales bacterium 2927939 Bacteria Bacteria 59.7 7.1e-10   NR HMS90702.1 2927939 g74481 i0 54.2 0.888888888888889 48 22 88.9 0 161 18 24 71 HMS90702.1 hypothetical protein [Candidatus Absconditabacterales bacterium] diamond 144 59.7 1 Bacteria Bacteria candidate phyla   Candidatus Absconditibacteriota   Candidatus Absconditabacterales     Candidatus Absconditabacterales bacterium
29290290 29290290 PRJNA597223_P_NODE_31689_length_265_cov_1.513043_g29843_i0 PRJNA597223 31689 265 1.513043 4.00956395 Candidatus Absconditabacterales bacterium 2927939 Bacteria Bacteria 46.2 2.71e-4   NR HMS90623.1 2927939 g29843 i0 44.2 0.486792452830189 43 24 48.7 0 251 123 11 53 HMS90623.1 hypothetical protein [Candidatus Absconditabacterales bacterium] diamond 129 46.2 1 Bacteria Bacteria candidate phyla   Candidatus Absconditibacteriota   Candidatus Absconditabacterales     Candidatus Absconditabacterales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;