RNAquarium Metadata Server
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contig_metadata

10 rows where bioproject = "PRJNA597223", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 10 ✖

tax_clade 1

  • Amoebozoa · 10 ✖

bioproject 1

  • PRJNA597223 · 10 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1844591 1844591 PRJNA597223_P_NODE_27902_length_290_cov_1.792157_g26056_i0 PRJNA597223 27902 290 1.792157 5.1972553 Thecamoeba quadrilineata 343530 Discosea other_Eukaryota 71.3 7.41e-8   NTclustered gi|2386968834|ref|NC_068853.1| 343530 g26056 i0 89.474 0.196551724137931 57 4 20 2 74 130 9326 9380 Thecamoeba quadrilineata mitochondrion, complete genome blastn 57 71.3 1 Eukaryota Amoebozoa   Discosea   Longamoebia Thecamoebida Thecamoeba Thecamoeba quadrilineata
5673091 5673091 PRJNA597223_P_NODE_62745_length_183_cov_2.331081_g60899_i0 PRJNA597223 62745 183 2.331081 4.26587823 Sappinia pedata 472956 Discosea other_Eukaryota 333 4.97e-87   NTclustered gi|157673611|gb|EU004599.1| 472956 g60899 i0 99.454 61.2896174863388 183 1 100 0 1 183 237 419 Sappinia pedata strain UK05-34-3a-M internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence blastn 11216 333 1 Eukaryota Amoebozoa   Discosea   Longamoebia Thecamoebida Sappinia Sappinia pedata
5673200 5673200 PRJNA597223_P_NODE_7065_length_655_cov_4.864516_g5623_i0 PRJNA597223 7065 655 4.864516 31.8625798 Korotnevella jeppesenii 1678066 Discosea other_Eukaryota 523 1.1499999999999996e-143   NTclustered gi|861553759|gb|KP719186.1| 1678066 g5623 i0 97.705 48.4167938931298 305 5 46 2 1 304 452 149 Korotnevella jeppesenii strain A4DVDPB clone 4 small subunit ribosomal RNA gene, partial sequence blastn 31713 523 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Korotnevella Korotnevella jeppesenii
5673377 5673377 PRJNA597223_P_NODE_85465_length_152_cov_1.846154_g83619_i0 PRJNA597223 85465 152 1.846154 2.80615408 Thecamoeba foliovenanda 2653195 Discosea other_Eukaryota 272 8.76e-69   NTclustered gi|2027879228|gb|MW970089.1| 2653195 g83619 i0 100 3.59868421052632 147 0 97 0 6 152 1009 1155 Thecamoeba foliovenanda strain Tfol_RM small subunit ribosomal RNA gene, partial sequence blastn 547 272 1 Eukaryota Amoebozoa   Discosea   Longamoebia Thecamoebida Thecamoeba Thecamoeba foliovenanda
12619854 12619854 PRJNA597223_P_NODE_71430_length_168_cov_3.135338_g69584_i0 PRJNA597223 71430 168 3.135338 5.26736784 Ripella 1217112 Discosea other_Eukaryota 272 9.95e-69   NTclustered gi|1269228373|gb|MF683498.1| 2047821 g69584 i0 95.858 100.910714285714 169 6 100 1 1 168 517 349 Ripella platypodia clone 26.9.30 18S ribosomal RNA gene, partial sequence blastn 16953 274 0.992700729927007 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella platypodia
15169001 15169001 PRJNA597223_P_NODE_83012_length_154_cov_2.806723_g81166_i0 PRJNA597223 83012 154 2.806723 4.32235342 Vannella 95228 Discosea other_Eukaryota 278 1.92e-70   NTclustered gi|399764233|gb|JQ271744.1| 1215648 g81166 i0 99.346 98.4415584415584 153 1 99 0 1 153 1789 1637 Vannella sp. JRF2 18S ribosomal RNA gene, partial sequence blastn 15160 278 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. JRF2
15871915 15871915 PRJNA597223_P_NODE_52013_length_193_cov_2.031646_g50167_i0 PRJNA597223 52013 193 2.031646 3.92107678 Ripella sp. PS2 1217116 Discosea other_Eukaryota 185 1.57e-42   NTclustered gi|399764205|gb|JQ271716.1| 1217116 g50167 i0 84.264 102.60103626943 197 24 100 7 1 193 1176 1369 Ripella sp. PS2 18S ribosomal RNA gene, partial sequence blastn 19802 185 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. PS2
15872319 15872319 PRJNA597223_P_NODE_913_length_1677_cov_355.496955_g557_i0 PRJNA597223 913 1677 355.496955 5961.68393535 Vannella septentrionalis 197531 Discosea other_Eukaryota 261 2.64e-64   NTclustered gi|300078499|gb|GU001161.1| 197531 g557 i0 76.493 18.2671437090042 536 92 31 27 161 687 1785 2295 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 30634 261 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
24794878 24794878 PRJNA597223_P_NODE_12120_length_491_cov_2.537281_g10387_i0 PRJNA597223 12120 491 2.537281 12.45804971 Korotnevella jeppesenii 1678066 Discosea other_Eukaryota 804 0   NTclustered gi|861553739|gb|KP719185.1| 1678066 g10387 i0 96.327 62.5356415478615 490 17 99 1 1 490 1079 591 Korotnevella jeppesenii strain A1JEPDK small subunit ribosomal RNA gene, partial sequence blastn 30705 804 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Korotnevella Korotnevella jeppesenii
30205951 30205951 PRJNA597223_P_NODE_32392_length_261_cov_1.181416_g30546_i0 PRJNA597223 32392 261 1.181416 3.08349576 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 75.1 9.56e-14   NR XP_004339668.1 1257118 g30546 i0 43.9 0.942528735632184 82 46 94.3 0 252 7 182 263 XP_004339668.1 Ras subfamily protein, putative [Acanthamoeba castellanii str. Neff] diamond 246 75.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;