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contig_metadata

12 rows where bioproject = "PRJNA596870" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 12 ✖

tax_clade 1

bioproject 1

  • PRJNA596870 · 12 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3119152 3119152 PRJNA596870_P_NODE_14683_length_340_cov_2.018727_g14550_i0 PRJNA596870 14683 340 2.018727 6.8636718 root 1 Root_unresolved Root_unresolved 162 1.2899999999999999e-43   NR KAG6973752.1 29920 g14550 i0 72.6 94.7294117647059 113 30 98.8 1 1 336 257 369 KAG6973752.1 hypothetical protein JG687_00000716 [Phytophthora cactorum] diamond 32208 163 0.993865030674847 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cactorum
8793289 8793289 PRJNA596870_P_NODE_22727_length_283_cov_1.247619_g22594_i0 PRJNA596870 22727 283 1.247619 3.53076177 Aphanomyces 100860 SAR_Eukaryotes SAR_Eukaryotes 381 2.929999999999999e-101   NTclustered gi|698822380|ref|XM_009845917.1| 112090 g22594 i0 91.103 60.3533568904594 281 25 99 0 1 281 160 440 Aphanomyces astaci hypothetical protein mRNA blastn 17080 381 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
18991991 18991991 PRJNA596870_P_NODE_6815_length_471_cov_0.967337_g6682_i0 PRJNA596870 6815 471 0.967337 4.55615727 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 296 1.92e-75   NTclustered gi|2795032738|ref|XM_067933181.1| 4785 g6682 i0 82.456 78.791932059448 342 57 73 2 24 365 991 653 Phytophthora cinnamomi Electron transfer flavoprotein subunit alpha, mitochondrial precursor (IUM83_08787), partial mRNA blastn 37111 296 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
23520523 23520523 PRJNA596870_P_NODE_13779_length_349_cov_1.394928_g13646_i0 PRJNA596870 13779 349 1.394928 4.86829872 Pythium 4797 SAR_Eukaryotes SAR_Eukaryotes 196 9.66e-60   NR TMW57100.1 41045 g13646 i0 80.2 4.96848137535817 116 23 99.7 0 348 1 222 337 TMW57100.1 hypothetical protein Poli38472_003025 [Pythium oligandrum] diamond 1734 197 0.99492385786802 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
26604757 26604757 PRJNA596870_P_NODE_22901_length_282_cov_1.392344_g22768_i0 PRJNA596870 22901 282 1.392344 3.92641008 [Pythium] brassicae (nom. inval.) 1485010 SAR_Eukaryotes SAR_Eukaryotes 78.2 2.02e-14   NR TYZ68600.1 1485010 g22768 i0 47.6 0.893617021276596 84 42 87.2 1 13 258 4 87 TYZ68600.1 hypothetical protein PybrP1_005498 [[Pythium] brassicae (nom. inval.)] diamond 252 78.2 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium [Pythium] brassicae (nom. inval.)
26649837 26649837 PRJNA596870_P_NODE_35521_length_245_cov_0.895349_g35388_i0 PRJNA596870 35521 245 0.895349 2.19360505 Globisporangium 1448052 SAR_Eukaryotes SAR_Eukaryotes 82.4 4.15e-16   NR KAF1323743.1 82926 g35388 i0 48.7 5.70612244897959 78 36 95.5 1 245 12 34 107 KAF1323743.1 Thioredoxin/protein disulfide isomerase, partial [Globisporangium splendens] diamond 1398 82.4 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium splendens
27585329 27585329 PRJNA596870_P_NODE_33844_length_247_cov_0.885057_g33711_i0 PRJNA596870 33844 247 0.885057 2.18609079 Aphanomyces cochlioides 112091 SAR_Eukaryotes SAR_Eukaryotes 136 8.46e-36   NR KAG9411200.1 112091 g33711 i0 78 0.995951417004049 82 16 97.2 2 241 2 2 83 KAG9411200.1 Sulfhydryl oxidase 1 [Aphanomyces cochlioides] diamond 246 136 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces cochlioides
29619061 29619061 PRJNA596870_P_NODE_38570_length_242_cov_0.911243_g38437_i0 PRJNA596870 38570 242 0.911243 2.20520806 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 79.7 5.19e-17   NR KAJ0411300.1 114742 g38437 i0 58.5 8.02066115702479 65 27 80.6 0 203 9 4 68 KAJ0411300.1 hypothetical protein ATCC90586_005709 [Pythium insidiosum] diamond 1941 80.1 0.995006242197254 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum
30333065 30333065 PRJNA596870_P_NODE_12632_length_362_cov_1.065744_g12499_i0 PRJNA596870 12632 362 1.065744 3.85799328 Pythium oligandrum 41045 SAR_Eukaryotes SAR_Eukaryotes 159 8.04e-44   NR TMW56654.1 41045 g12499 i0 64.3 1.9060773480663 115 41 95.3 0 15 359 29 143 TMW56654.1 hypothetical protein Poli38472_006664 [Pythium oligandrum] diamond 690 159 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
31628408 31628408 PRJNA596870_P_NODE_23836_length_277_cov_1.509804_g23703_i0 PRJNA596870 23836 277 1.509804 4.18215708 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 44.7 0.00924   NR KAH9096795.1 100861 g23703 i0 37.7 1.24548736462094 53 32 56.3 1 185 30 136 188 KAH9096795.1 hypothetical protein LEN26_017312 [Aphanomyces euteiches] diamond 345 44.7 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
32134735 32134735 PRJNA596870_P_NODE_29138_length_251_cov_0.865169_g29005_i0 PRJNA596870 29138 251 0.865169 2.17157419 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 63.2 1.33e-9   NR RHZ42841.1 112090 g29005 i0 44.1 1.41035856573705 59 33 70.5 0 48 224 61 119 RHZ42841.1 hypothetical protein DYB26_008897 [Aphanomyces astaci] diamond 354 63.2 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
32829490 32829490 PRJNA596870_P_NODE_31900_length_249_cov_0.875000_g31767_i0 PRJNA596870 31900 249 0.875 2.17875 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 126 1.98e-33   NR KAF0727801.1 100861 g31767 i0 78.8 2.91566265060241 80 17 96.4 0 243 4 1 80 KAF0727801.1 hypothetical protein Ae201684_014237 [Aphanomyces euteiches] diamond 726 126 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;