RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA596870" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA596870 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5672240 5672240 PRJNA596870_P_NODE_30285_length_250_cov_0.870056_g30152_i0 PRJNA596870 30285 250 0.870056 2.17514 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 52.8 0.023   NTclustered gi|2108049360|gb|CP070758.1| 2026742 g30152 i0 100 0.112 28 0 11 0 45 72 2816659 2816632 MAG: Gemmatimonadetes bacterium isolate bin29 chromosome blastn 28 52.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
23520751 23520751 PRJNA596870_P_NODE_26599_length_263_cov_1.473684_g26466_i0 PRJNA596870 26599 263 1.473684 3.87578892 Longimicrobium sp. 2029185 Bacteria Bacteria 167 5.35e-51   NR HEX5871167.1 2029185 g26466 i0 97.7 1.98479087452471 87 2 99.2 0 261 1 41 127 HEX5871167.1 MFS transporter [Longimicrobium sp.] diamond 522 167 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
27712067 27712067 PRJNA596870_P_NODE_29984_length_250_cov_1.723164_g29851_i0 PRJNA596870 29984 250 1.723164 4.30791 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 42.7 0.0416   NR HTD59871.1 2026741 g29851 i0 39.1 0.768 64 38 75.6 1 34 222 527 590 HTD59871.1 ABC transporter permease [Gemmatimonadaceae bacterium] diamond 192 42.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
30869670 30869670 PRJNA596870_P_NODE_22414_length_284_cov_2.151659_g22281_i0 PRJNA596870 22414 284 2.151659 6.11071156 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 45.1 0.00923   NR HEY3280413.1 2448054 g22281 i0 39.3 0.644366197183099 61 35 62.3 1 102 278 224 284 HEY3280413.1 hypothetical protein [Gemmatimonadales bacterium] diamond 183 45.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;