RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA596870" and tax_phylum = "Bacillariophyta"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA596870 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1844072 1844072 PRJNA596870_P_NODE_29862_length_251_cov_0.865169_g29729_i0 PRJNA596870 29862 251 0.865169 2.17157419 Climaconeis cf. scalaris 2846828 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.006   NTclustered gi|2073949001|gb|MZ365054.1| 2846828 g29729 i0 100 0.115537848605578 29 0 12 0 217 245 97519 97491 Climaconeis cf. scalaris strain SZCZ1888 plastid, complete genome blastn 29 54.7 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Berkeleyaceae Climaconeis Climaconeis cf. scalaris
17145846 17145846 PRJNA596870_P_NODE_16354_length_325_cov_2.345238_g16221_i0 PRJNA596870 16354 325 2.345238 7.6220235 Guinardia striata 1514137 SAR_Eukaryotes SAR_Eukaryotes 143 1.76e-29   NTclustered gi|2202538957|gb|OM891863.1| 1514137 g16221 i0 81.977 3.99384615384615 172 27 52 3 156 325 6053 5884 Guinardia striata small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 1298 143 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Rhizosoleniales Rhizosoleniaceae Guinardia Guinardia striata
27314619 27314619 PRJNA596870_P_NODE_11163_length_381_cov_1.000000_g11030_i0 PRJNA596870 11163 381 1 3.81 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 103 7.97e-26   NR CAB9509836.1 568900 g11030 i0 45.6 1.81889763779528 114 60 89 2 348 10 8 120 CAB9509836.1 expressed unknown protein [Seminavis robusta] diamond 693 103 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Seminavis Seminavis robusta

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;