RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA596870" and tax_kingdom = "Thermotogati"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 5 ✖

bioproject 1

  • PRJNA596870 · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8221772 8221772 PRJNA596870_P_NODE_36087_length_245_cov_0.895349_g35954_i0 PRJNA596870 36087 245 0.895349 2.19360505 Deinococcus sp. QL22 2939437 Bacteria Bacteria 193 1.25e-44   NTclustered gi|2238957582|gb|CP097149.1| 2939437 g35954 i0 80.816 27.9510204081633 245 47 100 0 1 245 1762438 1762194 Deinococcus sp. QL22 chromosome, complete genome blastn 6848 193 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. QL22
8793359 8793359 PRJNA596870_P_NODE_35527_length_245_cov_0.895349_g35394_i0 PRJNA596870 35527 245 0.895349 2.19360505 Deinococcus 1298 Bacteria Bacteria 95.3 3.62e-15   NTclustered gi|2706837832|gb|CP149782.1| 3112952 g35394 i0 78.912 1.18775510204082 147 26 60 4 100 245 2079628 2079486 Deinococcus sp. VB142 chromosome 1, complete sequence blastn 291 95.3 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. VB142
27301152 27301152 PRJNA596870_P_NODE_26223_length_265_cov_1.604167_g26090_i0 PRJNA596870 26223 265 1.604167 4.25104255 Deinococcus xinjiangensis 457454 Bacteria Bacteria 149 1.86e-42   NR WP_353541169.1 457454 g26090 i0 100 0.883018867924528 78 0 88.3 0 3 236 188 265 WP_353541169.1 NINE protein [Deinococcus xinjiangensis] diamond 234 149 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus xinjiangensis
28879784 28879784 PRJNA596870_P_NODE_16708_length_323_cov_0.920000_g16575_i0 PRJNA596870 16708 323 0.92 2.9716 Deinococcus hopiensis 309885 Bacteria Bacteria 166 1.03e-46   NR WP_170928889.1 309885 g16575 i0 73.6 2.95356037151703 106 28 98.5 0 4 321 66 171 WP_170928889.1 glycoside hydrolase family 30 protein [Deinococcus hopiensis] diamond 954 166 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus hopiensis
30111360 30111360 PRJNA596870_P_NODE_21592_length_288_cov_2.651163_g21459_i0 PRJNA596870 21592 288 2.651163 7.63534944 Deinococcus xinjiangensis 457454 Bacteria Bacteria 187 1.78e-58   NR WP_353542765.1 457454 g21459 i0 100 0.989583333333333 95 0 99 0 286 2 56 150 WP_353542765.1 histidine phosphatase family protein [Deinococcus xinjiangensis] diamond 285 187 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus xinjiangensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;