RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA596870", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 4 ✖

tax_kingdom 1

  • Pseudomonadati · 4 ✖

bioproject 1

  • PRJNA596870 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4968701 4968701 PRJNA596870_P_NODE_38884_length_242_cov_0.911243_g38751_i0 PRJNA596870 38884 242 0.911243 2.20520806 Desulfosudis 2904716 Bacteria Bacteria 252 2e-62   NTclustered gi|158508843|gb|CP000859.1| 96561 g38751 i0 85.714 201.285123966942 245 28 100 6 1 242 684011 683771 Desulfococcus oleovorans Hxd3, complete genome blastn 48711 252 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfosudaceae Desulfosudis Desulfosudis oleivorans
6946676 6946676 PRJNA596870_P_NODE_28666_length_252_cov_2.022346_g28533_i0 PRJNA596870 28666 252 2.022346 5.09631192 Desulfovibrio sp. 86 2666132 Bacteria Bacteria 466 6.89e-127   NTclustered gi|1862956133|emb|LR738849.1| 2666132 g28533 i0 100 103 252 0 100 0 1 252 3245259 3245510 Desulfovibrio sp. 86 genome assembly, chromosome: DESU86 blastn 25956 466 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio sp. 86
29132625 29132625 PRJNA596870_P_NODE_40689_length_227_cov_2.590909_g40556_i0 PRJNA596870 40689 227 2.590909 5.88136343 Syntrophus sp. SKADARSKE-3 3029837 Bacteria Bacteria 118 4.01e-30   NR MDQ5984429.1 3029837 g40556 i0 75.7 17.6563876651982 74 18 97.8 0 5 226 214 287 MDQ5984429.1 Acetyl-CoA acetyltransferase [Syntrophus sp. SKADARSKE-3] diamond 4008 118 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophia Syntrophales Syntrophaceae Syntrophus Syntrophus sp. SKADARSKE-3
30174547 30174547 PRJNA596870_P_NODE_35672_length_245_cov_0.895349_g35539_i0 PRJNA596870 35672 245 0.895349 2.19360505 Desulfobacula sp. 2593537 Bacteria Bacteria 49.3 1.84e-4   NR MCD4677405.1 2593537 g35539 i0 46.4 1.82448979591837 56 25 64.9 2 242 84 24 77 MCD4677405.1 PEGA domain-containing protein [Desulfobacula sp.] diamond 447 49.3 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae Desulfobacula Desulfobacula sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;