RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA596870", tax_kingdom = "Pseudomonadati" and tax_phylum = "Acidobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 3 ✖

tax_kingdom 1

  • Pseudomonadati · 3 ✖

bioproject 1

  • PRJNA596870 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12047427 12047427 PRJNA596870_P_NODE_21710_length_288_cov_1.316279_g21577_i0 PRJNA596870 21710 288 1.316279 3.79088352 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 309 1.4300000000000002e-79   NTclustered gi|2874253678|emb|OY969112.1| 171953 g21577 i0 86.268 5.03819444444444 284 39 99 0 4 287 5152057 5151774 MAG: uncultured Acidobacteriota bacterium isolate MFD04212.bin.1.16 genome assembly, chromosome: 1 blastn 1451 309 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
28469583 28469583 PRJNA596870_P_NODE_30366_length_250_cov_0.870056_g30233_i0 PRJNA596870 30366 250 0.870056 2.17514 Blastocatellia bacterium 2052146 Bacteria Bacteria 45.8 0.00344   NR HXG93547.1 2052146 g30233 i0 37.3 1.968 83 35 99.6 3 249 1 1015 1080 HXG93547.1 LodA/GoxA family CTQ-dependent oxidase [Blastocatellia bacterium] diamond 492 45.8 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia       Blastocatellia bacterium
31280468 31280468 PRJNA596870_P_NODE_39115_length_242_cov_0.911243_g38982_i0 PRJNA596870 39115 242 0.911243 2.20520806 Thermoanaerobaculia bacterium 2651171 Bacteria Bacteria 43.5 0.0198   NR HEX6160355.1 2651171 g38982 i0 36.4 0.818181818181818 66 42 81.8 0 219 22 504 569 HEX6160355.1 AAA family ATPase [Thermoanaerobaculia bacterium] diamond 198 43.5 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;