RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA596870", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 2 ✖

tax_kingdom 1

  • Bacillati · 2 ✖

bioproject 1

  • PRJNA596870 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6244158 6244158 PRJNA596870_P_NODE_34345_length_246_cov_1.335260_g34212_i0 PRJNA596870 34345 246 1.33526 3.2847396 Metamycoplasmataceae 2895623 Bacteria Bacteria 52.8 0.022   NTclustered gi|1563788636|emb|LR214955.1| 2115 g34212 i0 96.774 0.605691056910569 31 1 13 0 25 55 76387 76357 Mycoplasma fermentans strain NCTC10117 genome assembly, chromosome: 1 blastn 149 52.8 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis fermentans
23520956 23520956 PRJNA596870_P_NODE_36919_length_244_cov_0.900585_g36786_i0 PRJNA596870 36919 244 0.900585 2.1974274 Spiroplasma floricola 216937 Bacteria Bacteria 52.8 0.022   NTclustered gi|1297062390|gb|CP025057.1| 1336749 g36786 i0 91.892 0.278688524590164 37 3 15 0 208 244 413990 414026 Spiroplasma floricola 23-6 chromosome, complete genome blastn 68 52.8 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma floricola

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;