RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

12 rows where bioproject = "PRJNA596870", tax_clade = "Sar" and tax_phylum = "Apicomplexa"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 12 ✖

tax_clade 1

  • Sar · 12 ✖

bioproject 1

  • PRJNA596870 · 12 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1843839 1843839 PRJNA596870_P_NODE_18902_length_306_cov_1.652361_g18769_i0 PRJNA596870 18902 306 1.652361 5.05622466 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 106 9.4e-27   NR AET50562.1 5802 g18769 i0 56.9 8 102 28 98 2 302 3 24 111 AET50562.1 hypothetical protein [Eimeria tenella] diamond 2448 107 0.990654205607477 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria tenella
4968703 4968703 PRJNA596870_P_NODE_39544_length_241_cov_0.916667_g39411_i0 PRJNA596870 39544 241 0.916667 2.20916747 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.006   NTclustered gi|915002625|ref|XM_013393396.1| 5801 g39411 i0 100 6.58091286307054 29 0 12 0 124 152 3540 3512 Eimeria acervulina PHD-finger domain-containing protein, putative partial mRNA blastn 1586 54.7 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria acervulina
5672473 5672473 PRJNA596870_P_NODE_505_length_1449_cov_7.077035_g324_i2 PRJNA596870 505 1449 7.077035 102.54623715 Babesia ovata 189622 SAR_Eukaryotes SAR_Eukaryotes 2303 0   NTclustered gi|1624698158|ref|XM_029013947.1| 189622 g324 i2 96.812 1235.67563837129 1380 43 95 1 65 1444 1914 536 Babesia ovata endonuclease-reverse transcriptase (BOVATA_050300), partial mRNA blastn 1790494 2303 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia ovata
6946385 6946385 PRJNA596870_P_NODE_14086_length_346_cov_1.128205_g13953_i0 PRJNA596870 14086 346 1.128205 3.9035893 Theileria orientalis 68886 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.003   NTclustered gi|697890444|ref|XM_009692169.1| 869250 g13953 i0 96.97 0.0953757225433526 33 1 10 0 104 136 1927 1959 Theileria orientalis strain Shintoku predicted protein partial mRNA blastn 33 56.5 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Theileriidae Theileria Theileria orientalis
6946925 6946925 PRJNA596870_P_NODE_466_length_1501_cov_7.385854_g324_i1 PRJNA596870 466 1501 7.385854 110.86166854 Babesia ovata 189622 SAR_Eukaryotes SAR_Eukaryotes 2242 0   NTclustered gi|1624698158|ref|XM_029013947.1| 189622 g324 i1 96.014 1343.69953364424 1380 54 92 1 6 1385 536 1914 Babesia ovata endonuclease-reverse transcriptase (BOVATA_050300), partial mRNA blastn 2016893 2242 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia ovata
8221871 8221871 PRJNA596870_P_NODE_4687_length_556_cov_1.913043_g4556_i0 PRJNA596870 4687 556 1.913043 10.63651908 Babesia naoakii 2053980 SAR_Eukaryotes SAR_Eukaryotes 344 8.07e-90   NTclustered gi|2292649288|dbj|LC684683.1| 2053980 g4556 i0 78.349 94.0143884892086 545 109 97 8 4 542 286 827 Babesia naoakii R/2017/SL gene for glyceraldehyde-3-phosphate dehydrogenase protein, partial cds blastn 52272 344 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia naoakii
12047476 12047476 PRJNA596870_P_NODE_24270_length_275_cov_1.376238_g24137_i0 PRJNA596870 24270 275 1.376238 3.7846545 Sarcocystis capracanis 5816 SAR_Eukaryotes SAR_Eukaryotes 483 7.559999999999998e-132   NTclustered gi|3323436|gb|AF012885.1|AF012885 5816 g24137 i0 98.208 77.0945454545455 279 0 100 4 1 275 703 426 Sarcocystis capracanis 28S large subunit ribosomal RNA gene, complete sequence blastn 21201 483 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Sarcocystis Sarcocystis capracanis
19694926 19694926 PRJNA596870_P_NODE_33016_length_248_cov_0.880000_g32883_i0 PRJNA596870 33016 248 0.88 2.1824 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 139 2.08e-40   NR XP_013335580.1 5804 g32883 i0 84.1 35.7096774193548 82 13 99.2 0 2 247 21 102 XP_013335580.1 ribosomal protein L11, putative, partial [Eimeria maxima] diamond 8856 140 0.992857142857143 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria maxima
20266978 20266978 PRJNA596870_P_NODE_28056_length_255_cov_1.692308_g27923_i0 PRJNA596870 28056 255 1.692308 4.3153854 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.006   NTclustered gi|1084835323|ref|XM_018785354.1| 647221 g27923 i0 94.444 0.282352941176471 36 0 13 2 115 148 2483 2518 Plasmodium gaboni hypothetical protein partial mRNA blastn 72 54.7 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium gaboni
22245733 22245733 PRJNA596870_P_NODE_378_length_1606_cov_7.647097_g324_i0 PRJNA596870 378 1606 7.647097 122.81237782 Babesia ovata 189622 SAR_Eukaryotes SAR_Eukaryotes 2287 0   NTclustered gi|1624698158|ref|XM_029013947.1| 189622 g324 i0 96.594 1243.98381070984 1380 46 86 1 6 1385 536 1914 Babesia ovata endonuclease-reverse transcriptase (BOVATA_050300), partial mRNA blastn 1997838 2287 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia ovata
24794800 24794800 PRJNA596870_P_NODE_7140_length_461_cov_1.587629_g7007_i0 PRJNA596870 7140 461 1.587629 7.31896969 Plasmodium gallinaceum 5849 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.045   NTclustered gi|1620127558|ref|XM_028673316.1| 5849 g7007 i0 100 0.0607375271149675 28 0 6 0 410 437 5394 5421 Plasmodium gallinaceum conserved Plasmodium protein, unknown function (PGAL8A_00455700), partial mRNA blastn 28 52.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium gallinaceum
25366812 25366812 PRJNA596870_P_NODE_26500_length_264_cov_1.209424_g26367_i0 PRJNA596870 26500 264 1.209424 3.19287936 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 155 2.66e-43   NR KNG77494.1 580059 g26367 i0 84.1 183.988636363636 88 14 100 0 264 1 256 343 KNG77494.1 26S proteasome regulatory subunit 4 [Plasmodium falciparum IGH-CR14] diamond 48573 156 0.993589743589744 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;