RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA596870", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA596870 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17146092 17146092 PRJNA596870_P_NODE_29154_length_251_cov_0.865169_g29021_i0 PRJNA596870 29154 251 0.865169 2.17157419 Akkermansia muciniphila 239935 Bacteria Bacteria 464 2.47e-126   NTclustered gi|1888387165|gb|CP058562.1| 239935 g29021 i0 100 16.1115537848606 251 0 100 0 1 251 1836756 1836506 Akkermansia muciniphila strain AK32 chromosome, complete genome blastn 4044 464 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia muciniphila
27490688 27490688 PRJNA596870_P_NODE_32083_length_249_cov_0.875000_g31950_i0 PRJNA596870 32083 249 0.875 2.17875 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 41.6 0.033   NR MEC9131220.1 2026799 g31950 i0 35.8 0.63855421686747 53 34 63.9 0 235 77 57 109 MEC9131220.1 tetratricopeptide repeat protein [Verrucomicrobiota bacterium] diamond 159 41.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
31216866 31216866 PRJNA596870_P_NODE_5995_length_498_cov_0.981176_g5862_i0 PRJNA596870 5995 498 0.981176 4.88625648 Opitutales bacterium 2026772 Bacteria Bacteria 78.6 1.82e-13   NR MFP6886559.1 2026772 g5862 i0 38.3 1.44578313253012 120 65 66.9 2 429 97 51 170 MFP6886559.1 hypothetical protein [Opitutales bacterium] diamond 720 78.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales     Opitutales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;