RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJNA596870", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 9 ✖

tax_clade 1

  • Amoebozoa · 9 ✖

bioproject 1

  • PRJNA596870 · 9 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14597472 14597472 PRJNA596870_P_NODE_36912_length_244_cov_0.900585_g36779_i0 PRJNA596870 36912 244 0.900585 2.1974274 Vexillifera fluvialis 1105343 Discosea other_Eukaryota 409 1.1299999999999998e-109   NTclustered gi|354720323|gb|HQ687482.1| 1105343 g36779 i0 96.774 58.3032786885246 248 3 100 4 1 244 1491 1245 Vexillifera fluvialis strain RR1 small subunit ribosomal RNA gene, partial sequence blastn 14226 409 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae Vexillifera Vexillifera fluvialis
15871224 15871224 PRJNA596870_P_NODE_33213_length_247_cov_5.925287_g33080_i0 PRJNA596870 33213 247 5.925287 14.63545889 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 281 2.62e-71   NTclustered gi|470421212|ref|XM_004337322.1| 1257118 g33080 i0 89.593 82.2672064777328 221 23 89 0 27 247 1 221 Acanthamoeba castellanii str. Neff actin, putative (ACA1_328920), partial mRNA blastn 20320 281 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
24794521 24794521 PRJNA596870_P_NODE_27580_length_258_cov_1.248649_g27447_i0 PRJNA596870 27580 258 1.248649 3.22151442 Vexillifera fluvialis 1105343 Discosea other_Eukaryota 477 3.2699999999999985e-130   NTclustered gi|354720323|gb|HQ687482.1| 1105343 g27447 i0 100 78.6124031007752 258 0 100 0 1 258 823 1080 Vexillifera fluvialis strain RR1 small subunit ribosomal RNA gene, partial sequence blastn 20282 477 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae Vexillifera Vexillifera fluvialis
26953097 26953097 PRJNA596870_P_NODE_14962_length_338_cov_1.162264_g14829_i0 PRJNA596870 14962 338 1.162264 3.92845232 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 186 1.83e-56   NR XP_004333661.1 1257118 g14829 i0 75 0.994082840236686 112 28 99.4 0 2 337 31 142 XP_004333661.1 actin bundling protein [Acanthamoeba castellanii str. Neff] diamond 336 186 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27585333 27585333 PRJNA596870_P_NODE_40004_length_241_cov_0.916667_g39871_i0 PRJNA596870 40004 241 0.916667 2.20916747 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 95.1 1.31e-20   NR XP_004341800.1 1257118 g39871 i0 62.8 0.970954356846473 78 28 95.9 1 239 9 1004 1081 XP_004341800.1 Poly(ADPribose) polymerase catalytic domain containing protein [Acanthamoeba castellanii str. Neff] diamond 234 95.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28406330 28406330 PRJNA596870_P_NODE_30826_length_250_cov_0.870056_g30693_i0 PRJNA596870 30826 250 0.870056 2.17514 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 47 0.00128   NR XP_004336035.1 1257118 g30693 i0 47.7 0.528 44 20 51.6 2 137 9 637 678 XP_004336035.1 uncharacterized protein ACA1_366340 [Acanthamoeba castellanii str. Neff] diamond 132 47 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30440862 30440862 PRJNA596870_P_NODE_31953_length_249_cov_0.875000_g31820_i0 PRJNA596870 31953 249 0.875 2.17875 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 43.9 0.0124   NR XP_004337603.1 1257118 g31820 i0 60.5 1.78313253012048 38 15 45.8 0 114 1 72 109 XP_004337603.1 ribosomal protein L23, putative [Acanthamoeba castellanii str. Neff] diamond 444 43.9 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31343835 31343835 PRJNA596870_P_NODE_30376_length_250_cov_0.870056_g30243_i0 PRJNA596870 30376 250 0.870056 2.17514 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 99 4.1e-22   NR XP_004346040.1 1257118 g30243 i0 64.6 0.984 82 28 97.2 1 7 249 357 438 XP_004346040.1 Solute carrier family 29 (nucleoside transporters), member 1, putative [Acanthamoeba castellanii str. Neff] diamond 246 99 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31691682 31691682 PRJNA596870_P_NODE_29377_length_251_cov_0.865169_g29244_i0 PRJNA596870 29377 251 0.865169 2.17157419 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 106 2.07e-25   NR XP_004334145.1 1257118 g29244 i0 62.8 0.932270916334661 78 29 93.2 0 1 234 129 206 XP_004334145.1 ATPase family associated with various cellular activities (AAA) domain containing protein [Acanthamoeba castellanii str. Neff] diamond 234 106 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;