RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA596867" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA596867 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11343782 11343782 PRJNA596867_P_NODE_6829_length_311_cov_1.294118_g6754_i0 PRJNA596867 6829 311 1.294118 4.02470698 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 575 1.3899999999999995e-159   NTclustered gi|2308292763|gb|OK574305.1| 4784 g6754 i0 100 100.04501607717 311 0 100 0 1 311 30113 29803 Phytophthora capsici voucher Pc389 mitochondrion, complete genome blastn 31114 575 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora capsici
23520450 23520450 PRJNA596867_P_NODE_8159_length_289_cov_1.296296_g8084_i0 PRJNA596867 8159 289 1.296296 3.74629544 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 283 8.71e-72   NTclustered gi|2795059548|ref|XM_067942762.1| 4785 g8084 i0 88.745 1.59861591695502 231 26 80 0 57 287 645 415 Phytophthora cinnamomi uncharacterized protein (IUM83_17794), partial mRNA blastn 462 283 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;