RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA596867", tax_phylum = "Myxococcota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 4 ✖

tax_phylum 1

  • Myxococcota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA596867 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23520413 23520413 PRJNA596867_P_NODE_15479_length_229_cov_2.461538_g15404_i0 PRJNA596867 15479 229 2.461538 5.63692202 Corallococcus coralloides 184914 Bacteria Bacteria 333 6.519999999999999e-87   NTclustered gi|1561763003|gb|CP034669.1| 184914 g15404 i0 93.013 236.10480349345 229 15 100 1 1 229 144735 144508 Corallococcus coralloides strain B035 chromosome, complete genome blastn 54068 333 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus coralloides
28311610 28311610 PRJNA596867_P_NODE_10166_length_265_cov_0.895833_g10091_i0 PRJNA596867 10166 265 0.895833 2.37395745 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 43.9 0.0186   NR TMB46625.1 2026735 g10091 i0 35.7 1.90188679245283 56 34 63.4 1 221 54 299 352 TMB46625.1 MAG: hypothetical protein E6J55_01860 [Deltaproteobacteria bacterium] diamond 504 43.9 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
28374604 28374604 PRJNA596867_P_NODE_10266_length_263_cov_1.873684_g10191_i0 PRJNA596867 10266 263 1.873684 4.92778892 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 71.6 1.92e-12   NR MBM4355793.1 2026735 g10191 i0 58.2 0.627376425855513 55 23 62.7 0 262 98 254 308 MBM4355793.1 VWA domain-containing protein [Deltaproteobacteria bacterium] diamond 165 71.6 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
29069488 29069488 PRJNA596867_P_NODE_11688_length_250_cov_0.870056_g11613_i0 PRJNA596867 11688 250 0.870056 2.17514 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 40.8 0.0247   NR MEO8179371.1 2026735 g11613 i0 39 0.708 59 30 69.6 2 180 7 1 54 MEO8179371.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 177 40.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;