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contig_metadata

6 rows where bioproject = "PRJNA596867" and tax_clade = "Sar"

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tax_phylum 3

analysis 2

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA596867 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11343782 11343782 PRJNA596867_P_NODE_6829_length_311_cov_1.294118_g6754_i0 PRJNA596867 6829 311 1.294118 4.02470698 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 575 1.3899999999999995e-159   NTclustered gi|2308292763|gb|OK574305.1| 4784 g6754 i0 100 100.04501607717 311 0 100 0 1 311 30113 29803 Phytophthora capsici voucher Pc389 mitochondrion, complete genome blastn 31114 575 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora capsici
18419874 18419874 PRJNA596867_P_NODE_10595_length_259_cov_3.010753_g10520_i0 PRJNA596867 10595 259 3.010753 7.79785027 Vorticella sp. 4 JG-2011 1295638 SAR_Eukaryotes SAR_Eukaryotes 379 9.529999999999998e-101   NTclustered gi|512134943|gb|JX178902.1| 1295638 g10520 i0 93.077 89.027027027027 260 17 100 1 1 259 1630 1371 Vorticella sp. 4 JG-2011 clone 2 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 23058 379 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Vorticellidae Vorticella Vorticella sp. 4 JG-2011
19694444 19694444 PRJNA596867_P_NODE_4476_length_364_cov_8.168385_g4401_i0 PRJNA596867 4476 364 8.168385 29.7329214 Vorticella sp. 1 2979179 SAR_Eukaryotes SAR_Eukaryotes 645 1.2499999999999996e-180   NTclustered gi|2304601489|gb|OP458310.1| 2979179 g4401 i0 98.626 92.4450549450549 364 5 100 0 1 364 1469 1832 Vorticella sp. 1 large subunit ribosomal RNA gene, partial sequence blastn 33650 645 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Vorticellidae Vorticella Vorticella sp. 1
23520450 23520450 PRJNA596867_P_NODE_8159_length_289_cov_1.296296_g8084_i0 PRJNA596867 8159 289 1.296296 3.74629544 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 283 8.71e-72   NTclustered gi|2795059548|ref|XM_067942762.1| 4785 g8084 i0 88.745 1.59861591695502 231 26 80 0 57 287 645 415 Phytophthora cinnamomi uncharacterized protein (IUM83_17794), partial mRNA blastn 462 283 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
24794133 24794133 PRJNA596867_P_NODE_15320_length_240_cov_4.604790_g15245_i0 PRJNA596867 15320 240 4.60479 11.051496 Ophrydium crassicaule 2919885 SAR_Eukaryotes SAR_Eukaryotes 427 3.07e-115   NTclustered gi|2198905072|gb|OM801562.1| 2919885 g15245 i0 98.75 100.195833333333 240 3 100 0 1 240 325 86 Ophrydium crassicaule isolate WT2020072401 large subunit ribosomal RNA gene, partial sequence blastn 24047 427 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Ophrydiidae Ophrydium Ophrydium crassicaule
29195726 29195726 PRJNA596867_P_NODE_10749_length_258_cov_0.827027_g10674_i0 PRJNA596867 10749 258 0.827027 2.13372966 Eimeria brunetti 51314 SAR_Eukaryotes SAR_Eukaryotes 42.7 0.0434   NR CDJ53954.1 51314 g10674 i0 42.9 0.732558139534884 63 32 70.9 2 64 246 10 70 CDJ53954.1 zinc finger, putative [Eimeria brunetti] diamond 189 42.7 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria brunetti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;