RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA594101" and tax_phylum = "Mycoplasmatota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 8 ✖

tax_kingdom 1

bioproject 1

  • PRJNA594101 · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
567267 567267 PRJNA594101_S_NODE_6801_length_626_cov_2.016275_g6505_i0 PRJNA594101 6801 626 2.016275 12.6218815 Mycoplasmatota bacterium 2231116 Bacteria Bacteria 69.4 6.17e-7   NTclustered gi|2040452726|gb|CP074573.1| 2231116 g6505 i0 88.333 0.579872204472843 60 4 9 3 355 413 1911996 1912053 Tenericutes bacterium strain zrk4 chromosome, complete genome blastn 363 69.4 1 Bacteria   Bacillati Mycoplasmatota         Mycoplasmatota bacterium
7517288 7517288 PRJNA594101_S_NODE_23626_length_347_cov_1.631387_g23324_i0 PRJNA594101 23626 347 1.631387 5.66091289 root 1 Root_unresolved Root_unresolved 52.8 0.033   NTclustered gi|1563789200|emb|LR214962.1| 2115 g23324 i0 100 0.726224783861671 28 0 8 0 205 232 509845 509872 Mycoplasma fermentans strain NCTC10117 genome assembly, chromosome: 8 blastn 252 52.8 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis fermentans
27016417 27016417 PRJNA594101_S_NODE_48822_length_251_cov_1.022472_g48520_i0 PRJNA594101 48822 251 1.022472 2.56640472 Mycoplasmatota bacterium 2231116 Bacteria Bacteria 92 7.81e-20   NR MDO5393127.1 2231116 g48520 i0 57 0.944223107569721 79 34 94.4 0 3 239 124 202 MDO5393127.1 AAA family ATPase [Mycoplasmatota bacterium] diamond 237 92 1 Bacteria   Bacillati Mycoplasmatota         Mycoplasmatota bacterium
28406252 28406252 PRJNA594101_S_NODE_27746_length_323_cov_1.240000_g27444_i0 PRJNA594101 27746 323 1.24 4.0052 [Mycoplasma] falconis 92403 Bacteria Bacteria 48.5 8.88e-4   NR WP_140781537.1 92403 g27444 i0 52.3 2.06191950464396 44 17 37.2 1 84 203 636 679 WP_140781537.1 endopeptidase La [[Mycoplasma] falconis] diamond 666 48.5 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Metamycoplasma [Mycoplasma] falconis
28911049 28911049 PRJNA594101_S_NODE_1328_length_1276_cov_3.039069_g1189_i0 PRJNA594101 1328 1276 3.039069 38.77852044 Acholeplasmataceae bacterium 1898209 Bacteria Bacteria 99.4 3.05e-20   NR NMA05705.1 1898209 g1189 i0 60.6 1.27899686520376 71 28 16.7 0 976 764 75 145 NMA05705.1 DUF1343 domain-containing protein [Acholeplasmataceae bacterium] diamond 1632 99.4 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae   Acholeplasmataceae bacterium
28924647 28924647 PRJNA594101_S_NODE_38708_length_279_cov_1.519417_g38406_i0 PRJNA594101 38708 279 1.519417 4.23917343 Bacteria 2 Bacteria Bacteria 47.8 8.68e-4   NR HHU80306.1 1898209 g38406 i0 33.3 2.12903225806452 81 50 82.8 1 235 5 77 157 HHU80306.1 peptide chain release factor N(5)-glutamine methyltransferase [Acholeplasmataceae bacterium] diamond 594 47.8 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae   Acholeplasmataceae bacterium
29542742 29542742 PRJNA594101_S_NODE_16130_length_414_cov_1.580645_g15828_i0 PRJNA594101 16130 414 1.580645 6.5438703 Mycoplasmopsis arginini 2094 Bacteria Bacteria 59.7 2.6e-7   NR WP_129694494.1 2094 g15828 i0 35.1 1.40579710144928 97 60 70.3 2 395 105 65 158 WP_129694494.1 ribosome biogenesis GTPase Der [Mycoplasmopsis arginini] diamond 582 59.7 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis arginini
31452195 31452195 PRJNA594101_S_NODE_8616_length_558_cov_1.105155_g8316_i0 PRJNA594101 8616 558 1.105155 6.1667649 FCB group 1783270 Bacteria Bacteria 60.1 4.4e-7   NR AIV03421.1 1318617 g8316 i0 63.6 1.38172043010753 44 16 23.7 0 291 422 67 110 AIV03421.1 ABC transporter ATP-binding protein [Candidatus Malacoplasma girerdii] diamond 771 60.5 0.993388429752066 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Mycoplasmoidaceae Malacoplasma Candidatus Malacoplasma girerdii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;