RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA594101", tax_kingdom = "Pararnavirae" and tax_superkingdom = "Viruses"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

  • Viruses · 3 ✖

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 3 ✖

bioproject 1

  • PRJNA594101 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1842702 1842702 PRJNA594101_S_NODE_44242_length_262_cov_2.661376_g43940_i0 PRJNA594101 44242 262 2.661376 6.97280512 Lentivirus humimdef1 3418650 Viruses Viruses 62.1 3.97e-5   NTclustered gi|407734945|gb|JX447155.1| 11676 g43940 i0 95 0.305343511450382 40 0 15 2 129 168 4394 4357 HIV-1 isolate AA039a03R from Thailand pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds blastn 80 62.1 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
16442145 16442145 PRJNA594101_S_NODE_29193_length_316_cov_1.374486_g28891_i0 PRJNA594101 29193 316 1.374486 4.34337576 Gammaretrovirus 153135 Viruses Viruses 153 1.61e-40   NR ABU54795.1 11786 g28891 i0 100 10.5379746835443 74 0 70.3 0 315 94 685 758 ABU54795.1 gag-pro-pol polyprotein [Murine leukemia virus] diamond 3330 153 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
32514581 32514581 PRJNA594101_S_NODE_9119_length_543_cov_1.638298_g8819_i0 PRJNA594101 9119 543 1.638298 8.89595814 Moloney murine leukemia virus 11801 Viruses Viruses 373 2.1099999999999998e-116   NR NP_057933.2 11801 g8819 i0 100 9.94475138121547 180 0 99.4 0 541 2 776 955 NP_057933.2 Pr180 [Moloney murine leukemia virus] diamond 5400 373 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;