RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA594101" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 2 ✖

bioproject 1

  • PRJNA594101 · 2 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27869284 27869284 PRJNA594101_S_NODE_33285_length_299_cov_1.004425_g32983_i0 PRJNA594101 33285 299 1.004425 3.00323075 Deltaproteobacteria bacterium RIFCSPLOWO2_ 2026735 Bacteria Bacteria 43.1 0.0497   NR OGQ57063.1 1797881 g32983 i0 31.2 0.77257525083612 77 43 69.2 2 63 269 105 179 OGQ57063.1 MAG: hypothetical protein A3I75_04795 [Deltaproteobacteria bacterium RIFCSPLOWO2_02_FULL_50_16] diamond 231 43.1 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RIFCSPLOWO2_02_FULL_50_16
31944563 31944563 PRJNA594101_S_NODE_6197_length_655_cov_9.891753_g5907_i0 PRJNA594101 6197 655 9.891753 64.79098215 SAR324 cluster bacterium 2024889 Bacteria Bacteria 184 2e-55   NR HJL95153.1 2024889 g5907 i0 59.7 1.36488549618321 149 58 67.3 1 110 550 7 155 HJL95153.1 hypothetical protein [SAR324 cluster bacterium] diamond 894 184 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       SAR324 cluster bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;