RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA594101", tax_clade = "Sar" and tax_phylum = "Foraminifera"

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tax_superkingdom 1

tax_phylum 1

  • Foraminifera · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA594101 · 5 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28546170 28546170 PRJNA594101_S_NODE_51827_length_247_cov_1.770115_g51525_i0 PRJNA594101 51827 247 1.770115 4.37218405 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 94.7 1.87e-20   NR ETO30642.1 46433 g51525 i0 68.8 3.94736842105263 64 20 77.7 0 241 50 12 75 ETO30642.1 protein kinase [Reticulomyxa filosa] diamond 975 94.7 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
28848071 28848071 PRJNA594101_S_NODE_58408_length_233_cov_3.187500_g58106_i0 PRJNA594101 58408 233 3.1875 7.426875 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 55.5 1.06e-6   NR ETO30405.1 46433 g58106 i0 51 1.24892703862661 49 24 63.1 0 8 154 484 532 ETO30405.1 hypothetical protein RFI_06714, partial [Reticulomyxa filosa] diamond 291 55.5 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
30079602 30079602 PRJNA594101_S_NODE_4532_length_758_cov_4.773723_g4260_i0 PRJNA594101 4532 758 4.773723 36.18482034 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 114 6.88e-25   NR ETO06189.1 46433 g4260 i0 47.7 0.439313984168865 111 56 43.1 2 431 105 742 852 ETO06189.1 SAP DNA-binding domain-containing protein, partial [Reticulomyxa filosa] diamond 333 114 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
30775017 30775017 PRJNA594101_S_NODE_3534_length_848_cov_2.625806_g3289_i0 PRJNA594101 3534 848 2.625806 22.26683488 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 97.1 1.93e-18   NR ETO08396.1 46433 g3289 i0 45 2.27122641509434 131 66 44.9 3 101 481 1160 1288 ETO08396.1 Helicase conserved domain containing protein [Reticulomyxa filosa] diamond 1926 97.1 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
31691648 31691648 PRJNA594101_S_NODE_57877_length_239_cov_3.734940_g57575_i0 PRJNA594101 57877 239 3.73494 8.9265066 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 50.1 4.34e-5   NR ETO27002.1 46433 g57575 i0 61.8 0.426778242677824 34 13 42.7 0 221 120 36 69 ETO27002.1 dehydrogenase/reductase SDR family member 7 [Reticulomyxa filosa] diamond 102 50.1 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;