RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA594101", tax_clade = "FCB group" and tax_phylum = "Chlorobiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA594101 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26921559 26921559 PRJNA594101_S_NODE_27562_length_324_cov_1.227092_g27260_i0 PRJNA594101 27562 324 1.227092 3.97577808 Chlorobium sp. 1095 Bacteria Bacteria 52.4 3.04e-5   NR TLU84229.1 1095 g27260 i0 36.8 4.25925925925926 76 47 70.4 1 323 96 29 103 TLU84229.1 MAG: thioredoxin [Chlorobium sp.] diamond 1380 52.4 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobium Chlorobium sp.
31262297 31262297 PRJNA594101_S_NODE_56975_length_241_cov_2.434524_g56673_i0 PRJNA594101 56975 241 2.434524 5.86720284 FCB group 1783270 Bacteria Bacteria 60.1 2.69e-8   NR MBZ4218897.1 1095 g56673 i0 50.8 5.47717842323651 61 30 75.9 0 25 207 16 76 MBZ4218897.1 NADP-dependent malic enzyme [Chlorobium sp.] diamond 1320 60.5 0.993388429752066 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobium Chlorobium sp.
32211348 32211348 PRJNA594101_S_NODE_53598_length_245_cov_1.581395_g53296_i0 PRJNA594101 53598 245 1.581395 3.87441775 Chlorobium 1091 Bacteria Bacteria 57.4 1.93e-7   NR WP_126341447.1 1094 g53296 i0 36.3 2.91428571428571 80 50 98 1 6 245 22 100 WP_126341447.1 thioredoxin [Chlorobium phaeovibrioides] diamond 714 57.8 0.993079584775087 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobium Chlorobium phaeovibrioides

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;