RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA594101", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 3 ✖

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA594101 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14595987 14595987 PRJNA594101_S_NODE_34832_length_293_cov_1.209091_g34530_i0 PRJNA594101 34832 293 1.209091 3.54263663 Amoeba proteus 5775 Tubulinea other_Eukaryota 438 1.7799999999999999e-118   NTclustered gi|844573744|gb|KP411223.1| 5775 g34530 i0 93.603 1.01365187713311 297 14 100 3 1 293 317 22 Amoeba proteus Tom40 mRNA, complete cds blastn 297 438 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
27142588 27142588 PRJNA594101_S_NODE_25902_length_333_cov_1.319231_g25600_i0 PRJNA594101 25902 333 1.319231 4.39303923 Heleopera sphagni 318526 Tubulinea other_Eukaryota 50.4 1.82e-4   NR AFX84544.1 318526 g25600 i0 30.9 0.990990990990991 110 75 99.1 1 4 333 179 287 AFX84544.1 alpha tubulin, partial [Heleopera sphagni] diamond 330 50.4 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Heleoperidae Heleopera Heleopera sphagni
29209130 29209130 PRJNA594101_S_NODE_35389_length_291_cov_1.059633_g35087_i0 PRJNA594101 35389 291 1.059633 3.08353203 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 105 1.15e-25   NR ABD46563.1 5778 g35087 i0 46.2 3.75257731958763 93 50 95.9 0 287 9 49 141 ABD46563.1 succinyl-diaminopimelate desuccinylase-like protein A, partial [Vermamoeba vermiformis] diamond 1092 106 0.990566037735849 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;