RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA591127" and tax_phylum = "Kitrinoviricota"

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tax_superkingdom 1

tax_phylum 1

  • Kitrinoviricota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA591127 · 5 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4966837 4966837 PRJNA591127_P_NODE_16944_length_197_cov_2.637500_g16775_i0 PRJNA591127 16944 197 2.6375 5.195875 Tobamovirus 12234 Viruses Viruses 141 3.5400000000000003e-29   NTclustered gi|323404090|gb|HQ593616.1| 12253 g16775 i0 100 62.1522842639594 76 0 76 0 1 76 151 226 Tomato mosaic virus isolate TMV-Jahrum coat protein (CP) mRNA, complete cds blastn 12244 141 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus tomatotessellati
13319045 13319045 PRJNA591127_P_NODE_24751_length_170_cov_1.330827_g24582_i0 PRJNA591127 24751 170 1.330827 2.2624059 Tobamovirus viridimaculae 3432895 Viruses Viruses 315 1.64e-81   NTclustered gi|1338641401|gb|KY977430.1| 12235 g24582 i0 100 100 170 0 100 0 1 170 282 113 Cucumber green mottle mosaic virus isolate CGMMV-NMG coat protein (cp) gene, complete cds blastn 17000 315 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus viridimaculae
13892973 13892973 PRJNA591127_P_NODE_8251_length_257_cov_1.259091_g8083_i0 PRJNA591127 8251 257 1.259091 3.23586387 Tobamovirus 12234 Viruses Viruses 475 1.1699999999999999e-129   NTclustered gi|1782797563|gb|MK933286.1| 12235 g8083 i0 100 100 257 0 100 0 1 257 159 415 Cucumber green mottle mosaic virus isolate GDLZ, complete genome blastn 25700 475 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus viridimaculae
23517461 23517461 PRJNA591127_P_NODE_25739_length_164_cov_4.401575_g25570_i0 PRJNA591127 25739 164 4.401575 7.218583 Cucumovirus CMV 3428131 Viruses Viruses 303 3.42e-78   NTclustered gi|2296356105|gb|MW926533.1| 12305 g25570 i0 100 100.042682926829 164 0 100 0 1 164 1775 1938 Cucumber mosaic virus isolate CH99 3a protein and CP genes, complete cds blastn 16407 303 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Bromoviridae Cucumovirus Cucumovirus CMV
24791261 24791261 PRJNA591127_P_NODE_24740_length_170_cov_1.458647_g24571_i0 PRJNA591127 24740 170 1.458647 2.4796999 Cucumovirus PSV 3428133 Viruses Viruses 309 7.64e-80   NTclustered gi|55140577|gb|AY775057.1| 12313 g24571 i0 99.412 63.5352941176471 170 1 100 0 1 170 1381 1550 Peanut stunt virus, complete genome blastn 10801 309 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Bromoviridae Cucumovirus Cucumovirus PSV

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;