contig_metadata
12 rows where bioproject = "PRJNA591127" and tax_phylum = "Gemmatimonadota"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 9493378 | 9493378 | PRJNA591127_P_NODE_11088_length_221_cov_2.244565_g10919_i0 | PRJNA591127 | 11088 | 221 | 2.244565 | 4.96048865 | Gemmatimonas phototrophica | 1379270 | Bacteria | Bacteria | 292 | 1.06e-74 | NTclustered | gi|1015602748|gb|CP011454.1| | 1379270 | g10919 | i0 | 95.135 | 18.8235294117647 | 185 | 9 | 84 | 0 | 1 | 185 | 2075775 | 2075591 | Gemmatimonas phototrophica strain AP64, complete genome | blastn | 4160 | 292 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadaceae | Gemmatimonas | Gemmatimonas phototrophica | |
| 10769377 | 10769377 | PRJNA591127_P_NODE_28089_length_153_cov_4.310345_g27920_i0 | PRJNA591127 | 28089 | 153 | 4.310345 | 6.59482785 | uncultured Gemmatimonadales bacterium | 412054 | Bacteria | Bacteria | 215 | 1.51e-51 | NTclustered | gi|2874253755|emb|OY969695.1| | 412054 | g27920 | i0 | 96.875 | 11.9019607843137 | 128 | 4 | 84 | 0 | 26 | 153 | 341399 | 341272 | MAG: uncultured Gemmatimonadales bacterium isolate MFD04967.bin.1.34 genome assembly, chromosome: 1 | blastn | 1821 | 215 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | uncultured Gemmatimonadales bacterium | |||
| 12044275 | 12044275 | PRJNA591127_P_NODE_3550_length_382_cov_1.962319_g3382_i0 | PRJNA591127 | 3550 | 382 | 1.962319 | 7.49605858 | uncultured Gemmatimonadales bacterium | 412054 | Bacteria | Bacteria | 442 | 1.8499999999999992e-119 | NTclustered | gi|2874253978|emb|OY970303.1| | 412054 | g3382 | i0 | 87.76 | 63.0157068062827 | 384 | 39 | 100 | 7 | 1 | 382 | 1903188 | 1903565 | MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 | blastn | 24072 | 442 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | uncultured Gemmatimonadales bacterium | |||
| 15867858 | 15867858 | PRJNA591127_P_NODE_4953_length_328_cov_2.542955_g4785_i0 | PRJNA591127 | 4953 | 328 | 2.542955 | 8.3408924 | uncultured Gemmatimonadales bacterium | 412054 | Bacteria | Bacteria | 416 | 9.5e-112 | NTclustered | gi|2874253978|emb|OY970303.1| | 412054 | g4785 | i0 | 89.443 | 123.996951219512 | 341 | 20 | 99 | 4 | 3 | 327 | 1903971 | 1903631 | MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 | blastn | 40671 | 416 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | uncultured Gemmatimonadales bacterium | |||
| 15867898 | 15867898 | PRJNA591127_P_NODE_9973_length_233_cov_2.117347_g9805_i0 | PRJNA591127 | 9973 | 233 | 2.117347 | 4.93341851 | uncultured Gemmatimonadales bacterium | 412054 | Bacteria | Bacteria | 303 | 5.21e-78 | NTclustered | gi|2874253978|emb|OY970303.1| | 412054 | g9805 | i0 | 91.189 | 238.248927038627 | 227 | 14 | 97 | 4 | 1 | 225 | 1902040 | 1901818 | MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 | blastn | 55512 | 303 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | uncultured Gemmatimonadales bacterium | |||
| 18990198 | 18990198 | PRJNA591127_P_NODE_27575_length_156_cov_0.983193_g27406_i0 | PRJNA591127 | 27575 | 156 | 0.983193 | 1.53378108 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 209 | 7.2e-50 | NTclustered | gi|307722607|gb|GU195855.1| | 203437 | g27406 | i0 | 94.776 | 80.6346153846154 | 134 | 7 | 86 | 0 | 23 | 156 | 546 | 413 | Uncultured Gemmatimonadetes bacterium clone P2A12 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence | blastn | 12579 | 211 | 0.990521327014218 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | uncultured Gemmatimonadota bacterium | |||||
| 19691537 | 19691537 | PRJNA591127_P_NODE_31036_length_151_cov_1.096491_g30867_i0 | PRJNA591127 | 31036 | 151 | 1.096491 | 1.65570141 | uncultured Gemmatimonadales bacterium | 412054 | Bacteria | Bacteria | 169 | 1.17e-37 | NTclustered | gi|2874253978|emb|OY970303.1| | 412054 | g30867 | i0 | 91.27 | 22.7284768211921 | 126 | 8 | 83 | 2 | 25 | 149 | 1904084 | 1903961 | MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 | blastn | 3432 | 169 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | uncultured Gemmatimonadales bacterium | |||
| 19691555 | 19691555 | PRJNA591127_P_NODE_4436_length_345_cov_1.350649_g4268_i0 | PRJNA591127 | 4436 | 345 | 1.350649 | 4.65973905 | Gemmatimonas phototrophica | 1379270 | Bacteria | Bacteria | 381 | 3.669999999999999e-101 | NTclustered | gi|1015602748|gb|CP011454.1| | 1379270 | g4268 | i0 | 87.283 | 681.791304347826 | 346 | 29 | 98 | 11 | 5 | 343 | 2076268 | 2076605 | Gemmatimonas phototrophica strain AP64, complete genome | blastn | 235218 | 381 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadaceae | Gemmatimonas | Gemmatimonas phototrophica | |
| 20967128 | 20967128 | PRJNA591127_P_NODE_10617_length_226_cov_1.174603_g10449_i0 | PRJNA591127 | 10617 | 226 | 1.174603 | 2.65460278 | uncultured Gemmatimonadales bacterium | 412054 | Bacteria | Bacteria | 230 | 8.659999999999999e-56 | NTclustered | gi|2874253978|emb|OY970303.1| | 412054 | g10449 | i0 | 86.175 | 373.592920353982 | 217 | 24 | 95 | 6 | 5 | 218 | 5915480 | 5915267 | MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 | blastn | 84432 | 230 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | uncultured Gemmatimonadales bacterium | |||
| 22242297 | 22242297 | PRJNA591127_P_NODE_7018_length_277_cov_8.929167_g6850_i0 | PRJNA591127 | 7018 | 277 | 8.929167 | 24.73379259 | uncultured Gemmatimonadales bacterium | 412054 | Bacteria | Bacteria | 270 | 6.46e-68 | NTclustered | gi|2874253728|emb|OY969570.1| | 412054 | g6850 | i0 | 85.556 | 189.73285198556 | 270 | 26 | 95 | 12 | 12 | 274 | 173052 | 173315 | MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 | blastn | 52556 | 270 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | uncultured Gemmatimonadales bacterium | |||
| 28279636 | 28279636 | PRJNA591127_P_NODE_8306_length_256_cov_1.894977_g8138_i0 | PRJNA591127 | 8306 | 256 | 1.894977 | 4.85114112 | Longimicrobiales bacterium | 2910168 | Bacteria | Bacteria | 42.7 | 0.0396 | NR | MDP2955286.1 | 2910168 | g8138 | i0 | 44.2 | 0.609375 | 52 | 25 | 60.9 | 1 | 33 | 188 | 241 | 288 | MDP2955286.1 type II CAAX endopeptidase family protein [Longimicrobiales bacterium] | diamond | 156 | 42.7 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Longimicrobiia | Longimicrobiales | Longimicrobiales bacterium | |||
| 32166323 | 32166323 | PRJNA591127_P_NODE_14298_length_197_cov_4.525000_g14129_i0 | PRJNA591127 | 14298 | 197 | 4.525 | 8.91425 | Gemmatimonadota bacterium | 2026742 | Bacteria | Bacteria | 50.4 | 3.9e-5 | NR | MDQ3950553.1 | 2026742 | g14129 | i0 | 38.5 | 0.989847715736041 | 65 | 40 | 99 | 0 | 1 | 195 | 337 | 401 | MDQ3950553.1 PAS domain S-box protein [Gemmatimonadota bacterium] | diamond | 195 | 50.4 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadota bacterium |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;