RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA591127" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA591127 · 6 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1138889 1138889 PRJNA591127_P_NODE_31001_length_151_cov_1.368421_g30832_i0 PRJNA591127 31001 151 1.368421 2.06631571 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 196 5.38e-46   NTclustered gi|330902891|gb|JF298270.1| 313997 g30832 i0 90.541 93.9139072847682 148 14 98 0 1 148 502 649 Cochliopodium minus clone 5201 actin gene, partial cds blastn 14181 196 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
5668820 5668820 PRJNA591127_P_NODE_23865_length_175_cov_3.659420_g23696_i0 PRJNA591127 23865 175 3.65942 6.403985 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 169 1.4e-37   NTclustered gi|300078498|gb|GU001160.1| 5755 g23696 i0 87.838 34.2571428571429 148 12 85 2 28 175 5596 5455 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 5995 169 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
10067386 10067386 PRJNA591127_P_NODE_26228_length_162_cov_1.568000_g26059_i0 PRJNA591127 26228 162 1.568 2.54016 Vannellidae 95227 Discosea other_Eukaryota 296 5.64e-76   NTclustered gi|33946343|gb|AY294150.1| 197527 g26059 i0 99.383 100.592592592593 162 1 100 0 1 162 1574 1413 Platyamoeba placida small subunit ribosomal RNA gene, partial sequence blastn 16296 296 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Platyamoeba Platyamoeba placida
10769237 10769237 PRJNA591127_P_NODE_11029_length_221_cov_7.657609_g10860_i0 PRJNA591127 11029 221 7.657609 16.92331589 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 243 1.08e-59   NTclustered gi|300078498|gb|GU001160.1| 5755 g10860 i0 86.9 1.03619909502262 229 14 100 11 1 221 5708 5928 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 229 243 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
19691590 19691590 PRJNA591127_P_NODE_8696_length_249_cov_12.750000_g8528_i0 PRJNA591127 8696 249 12.75 31.7475 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 265 2.6599999999999997e-66   NTclustered gi|300078498|gb|GU001160.1| 5755 g8528 i0 86.122 1.15261044176707 245 27 98 3 7 249 7831 7592 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 287 265 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
23517565 23517565 PRJNA591127_P_NODE_8639_length_250_cov_9.539906_g8471_i0 PRJNA591127 8639 250 9.539906 23.849765 Vannella sp. ACN1 1215628 Discosea other_Eukaryota 462 8.83e-126   NTclustered gi|399764213|gb|JQ271724.1| 1215628 g8471 i0 100 94.488 250 0 100 0 1 250 130 379 Vannella sp. ACN1 18S ribosomal RNA gene, partial sequence blastn 23622 462 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. ACN1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;