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contig_metadata

20 rows where bioproject = "PRJNA591127", tax_clade = "Sar" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 20 ✖

tax_clade 1

  • Sar · 20 ✖

bioproject 1

  • PRJNA591127 · 20 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3116104 3116104 PRJNA591127_P_NODE_6983_length_278_cov_4.116183_g6815_i0 PRJNA591127 6983 278 4.116183 11.44298874 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 104 6.97e-18   NTclustered gi|673036227|ref|XM_008873853.1| 157072 g6815 i0 83.636 19.4928057553957 110 18 40 0 168 277 1081 972 Aphanomyces invadans adenosylhomocysteinase 2 mRNA blastn 5419 104 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
5668931 5668931 PRJNA591127_P_NODE_8525_length_252_cov_8.330233_g8357_i0 PRJNA591127 8525 252 8.330233 20.99218716 Achlya klebsiana 4767 SAR_Eukaryotes SAR_Eukaryotes 237 5.88e-58   NTclustered gi|166301|gb|J05597.1|ACKBTUB 4767 g8357 i0 86.916 78.1230158730159 214 24 84 2 41 251 1542 1330 A.klebsiana beta-tubulin gene, complete cds blastn 19687 237 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya klebsiana
6943263 6943263 PRJNA591127_P_NODE_25106_length_168_cov_1.389313_g24937_i0 PRJNA591127 25106 168 1.389313 2.33404584 Phytophthora infestans 4787 SAR_Eukaryotes SAR_Eukaryotes 207 2.85e-49   NTclustered gi|2661425901|ref|XR_009934662.1| 403677 g24937 i0 88.824 84.5119047619048 170 17 100 2 1 168 2924 3093 Phytophthora infestans T30-4 28S ribosomal RNA (PITG_33268), rRNA blastn 14198 207 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
8218376 8218376 PRJNA591127_P_NODE_7587_length_267_cov_3.208696_g7419_i0 PRJNA591127 7587 267 3.208696 8.56721832 Plasmopara viticola 143451 SAR_Eukaryotes SAR_Eukaryotes 460 3.4299999999999996e-125   NTclustered gi|33520233|gb|AY273978.1| 143451 g7419 i0 97.753 99.9588014981273 267 6 100 0 1 267 436 170 Plasmopara viticola large subunit ribosomal RNA gene, partial sequence blastn 26689 460 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara viticola
11342222 11342222 PRJNA591127_P_NODE_29_length_2180_cov_23.082128_g20_i0 PRJNA591127 29 2180 23.082128 503.1903904 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 211 3.52e-49   NTclustered gi|937408816|ref|NC_027966.1| 114742 g20 i0 79.739 15.1169724770642 306 51 14 10 366 665 9797 10097 Pythium insidiosum mitochondrial DNA, complete genome blastn 32955 213 0.990610328638498 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum
12044230 12044230 PRJNA591127_P_NODE_27730_length_155_cov_1.847458_g27561_i0 PRJNA591127 27730 155 1.847458 2.8635599 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 86.7 1.66e-19   NR KAL0583940.1 65357 g27561 i0 84.3 6.90967741935484 51 8 98.7 0 2 154 36 86 KAL0583940.1 hypothetical protein ABG067_006208 [Albugo candida] diamond 1071 86.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo candida
12044280 12044280 PRJNA591127_P_NODE_4770_length_334_cov_2.292929_g4602_i0 PRJNA591127 4770 334 2.292929 7.65838286 Phytophthora sp. ML-2023a 3044284 SAR_Eukaryotes SAR_Eukaryotes 113 1.42e-20   NTclustered gi|2500404807|gb|OQ735416.1| 3044284 g4602 i0 76.733 55.2095808383234 202 47 60 0 114 315 15700 15901 Phytophthora sp. ML-2023a voucher AM18FRL12 mitochondrion, complete genome blastn 18440 113 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sp. ML-2023a
13319058 13319058 PRJNA591127_P_NODE_26611_length_160_cov_1.902439_g26442_i0 PRJNA591127 26611 160 1.902439 3.0439024 Plasmopara viticola 143451 SAR_Eukaryotes SAR_Eukaryotes 296 5.55e-76   NTclustered gi|126565763|gb|EF426546.1| 143451 g26442 i0 100 95 160 0 100 0 1 160 767 608 Plasmopara viticola strain UASWS SG1 28S ribosomal RNA gene, complete sequence blastn 15200 296 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara viticola
14593936 14593936 PRJNA591127_P_NODE_27112_length_158_cov_1.132231_g26943_i0 PRJNA591127 27112 158 1.132231 1.78892498 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 128 2.11e-25   NTclustered gi|675197364|ref|XM_008909319.1| 761204 g26943 i0 86.325 4.80379746835443 117 16 74 0 13 129 2150 2034 Phytophthora parasitica INRA-310 hypothetical protein mRNA blastn 759 128 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
19691495 19691495 PRJNA591127_P_NODE_26776_length_159_cov_2.713115_g26607_i0 PRJNA591127 26776 159 2.713115 4.31385285 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 228 2.0399999999999996e-55   NTclustered gi|325195057|emb|FR825852.1| 890382 g26607 i0 92.5 25.2075471698113 160 11 100 1 1 159 136 295 Albugo laibachii Nc14, genomic contig CONTIG_2891_NC14_v4_540_391 blastn 4008 228 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
21540816 21540816 PRJNA591127_P_NODE_32217_length_150_cov_1.681416_g32048_i0 PRJNA591127 32217 150 1.681416 2.522124 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 255 8.680000000000001e-64   NTclustered gi|158346541|gb|EU049279.1| 123356 g32048 i0 97.959 98.0266666666667 147 3 98 0 1 147 189 335 Hyaloperonospora parasitica voucher GG1 (MA) internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence blastn 14704 255 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora parasitica
24090583 24090583 PRJNA591127_P_NODE_13999_length_197_cov_5.462500_g13830_i0 PRJNA591127 13999 197 5.4625 10.761125 Albugo 65356 SAR_Eukaryotes SAR_Eukaryotes 84.2 6.05e-12   NTclustered gi|325195448|emb|FR826242.1| 890382 g13830 i0 87.5 0.730964467005076 72 9 37 0 2 73 318 389 Albugo laibachii Nc14, genomic contig CONTIG_3365_NC14_v4_389_722 blastn 144 84.2 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
24791284 24791284 PRJNA591127_P_NODE_27960_length_154_cov_1.666667_g27791_i0 PRJNA591127 27960 154 1.666667 2.56666718 Nothophytophthora sp. 2853999 SAR_Eukaryotes SAR_Eukaryotes 156 9.359999999999999e-34   NTclustered gi|2240249467|gb|MW648547.1| 2853999 g27791 i0 85.161 62.0064935064935 155 19 99 4 2 154 17955 18107 Nothophytophthora sp. culture ICMP:18719 mitochondrion, complete genome blastn 9549 156 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Nothophytophthora Nothophytophthora sp.
27851127 27851127 PRJNA591127_P_NODE_27204_length_157_cov_3.675000_g27035_i0 PRJNA591127 27204 157 3.675 5.76975 root 1 Root_unresolved Root_unresolved 87 1.65e-18   NR DAZ97811.1 4803 g27035 i0 80.4 63.1528662420382 51 10 97.5 0 156 4 282 332 DAZ97811.1 TPA: hypothetical protein N0F65_002481 [Lagenidium giganteum] diamond 9915 87.8 0.990888382687927 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium giganteum
28324770 28324770 PRJNA591127_P_NODE_30886_length_151_cov_2.350877_g30717_i0 PRJNA591127 30886 151 2.350877 3.54982427 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 60.1 8.09e-9   NR TYZ63558.1 1485010 g30717 i0 68.3 8.64238410596026 41 13 81.5 0 150 28 642 682 TYZ63558.1 hypothetical protein PybrP1_013152 [[Pythium] brassicae (nom. inval.)] diamond 1305 60.1 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium [Pythium] brassicae (nom. inval.)
28924626 28924626 PRJNA591127_P_NODE_11888_length_213_cov_6.721591_g11719_i0 PRJNA591127 11888 213 6.721591 14.31698883 Peronosporaceae 4777 SAR_Eukaryotes SAR_Eukaryotes 90.1 5.4300000000000006e-21   NR KAK1929143.1 4793 g11719 i0 66.2 3.84507042253521 68 22 94.4 1 9 209 53 120 KAK1929143.1 40S ribosomal protein S7-2 [Phytophthora citrophthora] diamond 819 90.5 0.995580110497237 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora citrophthora
30205816 30205816 PRJNA591127_P_NODE_29952_length_151_cov_3.280702_g29783_i0 PRJNA591127 29952 151 3.280702 4.95386002 Pythium insidiosum 114742 SAR_Eukaryotes SAR_Eukaryotes 50.1 2.8e-5   NR KAJ0401938.1 114742 g29783 i0 42.4 5.26490066225166 66 13 81.5 1 23 145 1412 1477 KAJ0401938.1 hypothetical protein ATCC90586_008269 [Pythium insidiosum] diamond 795 50.1 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum
31705052 31705052 PRJNA591127_P_NODE_22457_length_185_cov_1.317568_g22288_i0 PRJNA591127 22457 185 1.317568 2.4375008 Saprolegniales 4763 SAR_Eukaryotes SAR_Eukaryotes 94.4 8.35e-24   NR OQS01868.1 74557 g22288 i0 84.9 4.26486486486487 53 8 85.9 0 159 1 1 53 OQS01868.1 H/ACA ribonucleoprotein complex subunit 3 [Thraustotheca clavata] diamond 789 94.4 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Thraustotheca Thraustotheca clavata
31881204 31881204 PRJNA591127_P_NODE_25137_length_167_cov_14.630769_g24968_i0 PRJNA591127 25137 167 14.630769 24.43338423 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 49.7 1.83e-5   NR RHY74090.1 112090 g24968 i0 57.1 0.754491017964072 42 13 66.5 1 11 121 114 155 RHY74090.1 hypothetical protein DYB30_004665 [Aphanomyces astaci] diamond 126 49.7 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
32716777 32716777 PRJNA591127_P_NODE_27100_length_158_cov_1.289256_g26931_i0 PRJNA591127 27100 158 1.289256 2.03702448 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 55.5 1.43e-7   NR XP_067751051.1 164328 g26931 i0 50 3.79746835443038 50 22 94.9 1 152 3 25 71 XP_067751051.1 Translationally-controlled tumor protein-like protein [Phytophthora ramorum] diamond 600 55.5 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;