RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA591127", tax_clade = "Opisthokonta" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 7 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 7 ✖

bioproject 1

  • PRJNA591127 · 7 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
565014 565014 PRJNA591127_P_NODE_1341_length_578_cov_4.658041_g1198_i0 PRJNA591127 1341 578 4.658041 26.92347698 Spirometra erinaceieuropaei 99802 Platyhelminthes Platyhelminthes 254 1.46e-62   NTclustered gi|690647901|emb|LN195382.1| 99802 g1198 i0 77.609 1.72318339100346 460 76 79 16 122 577 1349 913 Spirometra erinaceieuropaei genome assembly S_erinaceieuropaei, scaffold SPER_scaffold0167598 blastn 996 254 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Spirometra Spirometra erinaceieuropaei
5668752 5668752 PRJNA591127_P_NODE_1565_length_542_cov_4.334653_g1414_i0 PRJNA591127 1565 542 4.334653 23.49381926 Schmidtea mediterranea 79327 Platyhelminthes Platyhelminthes 540 9.33e-149   NTclustered gi|158714112|gb|EU082826.1| 79327 g1414 i0 93.023 17.9059040590406 387 0 66 1 1 360 793 407 Schmidtea mediterranea beta-catenin-like protein 1 (bcat1) mRNA, complete cds blastn 9705 540 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Tricladida Dugesiidae Schmidtea Schmidtea mediterranea
6943194 6943194 PRJNA591127_P_NODE_17006_length_197_cov_2.618750_g16837_i0 PRJNA591127 17006 197 2.61875 5.1589375 Spirometra erinaceieuropaei 99802 Platyhelminthes Platyhelminthes 54.7 0.005   NTclustered gi|690909386|emb|LN416947.1| 99802 g16837 i0 100 0.147208121827411 29 0 15 0 169 197 140 112 Spirometra erinaceieuropaei genome assembly S_erinaceieuropaei ,scaffold SPER_contig0169125 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Spirometra Spirometra erinaceieuropaei
8218395 8218395 PRJNA591127_P_NODE_9967_length_233_cov_2.198980_g9799_i0 PRJNA591127 9967 233 2.19898 5.1236234 Schmidtea mediterranea 79327 Platyhelminthes Platyhelminthes 431 2.2899999999999996e-116   NTclustered gi|158714112|gb|EU082826.1| 79327 g9799 i0 100 6.82832618025751 233 0 100 0 1 233 1063 831 Schmidtea mediterranea beta-catenin-like protein 1 (bcat1) mRNA, complete cds blastn 1591 431 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Tricladida Dugesiidae Schmidtea Schmidtea mediterranea
17142651 17142651 PRJNA591127_P_NODE_154_length_1281_cov_4.955788_g114_i0 PRJNA591127 154 1281 4.955788 63.48364428 Schmidtea mediterranea 79327 Platyhelminthes Platyhelminthes 1989 0   NTclustered gi|159498725|gb|EU130786.1| 79327 g114 i0 100 11.5175644028103 1077 0 84 0 205 1281 1784 708 Schmidtea mediterranea beta-catenin-like protein mRNA, partial cds blastn 14754 1989 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Tricladida Dugesiidae Schmidtea Schmidtea mediterranea
19691493 19691493 PRJNA591127_P_NODE_2656_length_434_cov_3.594458_g2489_i0 PRJNA591127 2656 434 3.594458 15.59994772 Schmidtea mediterranea 79327 Platyhelminthes Platyhelminthes 798 0   NTclustered gi|24796399|gb|AY066907.1| 79327 g2489 i0 99.77 1 434 1 100 0 1 434 39 472 Schmidtea mediterranea clone H.17.7f unknown mRNA sequence blastn 434 798 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Tricladida Dugesiidae Schmidtea Schmidtea mediterranea
20967363 20967363 PRJNA591127_P_NODE_6437_length_290_cov_1.889328_g6269_i0 PRJNA591127 6437 290 1.889328 5.4790512 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 375 1.4e-99   NTclustered gi|68479954|gb|DQ076149.1| 6182 g6269 i0 93.023 0.889655172413793 258 17 89 1 19 275 432 175 Schistosoma japonicum clone 1XA1 unknown mRNA blastn 258 375 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;