RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA591127", tax_clade = "Methanomada group" and tax_phylum = "Methanobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 3 ✖

tax_kingdom 1

tax_clade 1

  • Methanomada group · 3 ✖

bioproject 1

  • PRJNA591127 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8218333 8218333 PRJNA591127_P_NODE_31307_length_150_cov_5.017699_g31138_i0 PRJNA591127 31307 150 5.017699 7.5265485 Methanocaldococcus jannaschii 2190 Archaea Archaea 58.4 2.63e-4   NTclustered gi|6626255|gb|L77117.1| 243232 g31138 i0 100 0.58 31 0 21 0 118 148 994216 994186 Methanocaldococcus jannaschii DSM 2661, complete genome blastn 87 58.4 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanocaldococcaceae Methanocaldococcus Methanocaldococcus jannaschii
22816080 22816080 PRJNA591127_P_NODE_32298_length_150_cov_1.026549_g32129_i0 PRJNA591127 32298 150 1.026549 1.5398235 Methanobrevibacter 2172 Archaea Archaea 255 8.680000000000001e-64   NTclustered gi|2791693311|gb|CP144200.1| 2173 g32129 i0 97.333 131.02 150 4 100 0 1 150 1285970 1285821 Methanobrevibacter smithii strain GRAZ-2 chromosome, complete genome blastn 19653 255 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
31786295 31786295 PRJNA591127_P_NODE_20657_length_196_cov_3.069182_g20488_i0 PRJNA591127 20657 196 3.069182 6.01559672 Methanobacterium sp. 2164 Archaea Archaea 45.1 0.00266   NR MDD1775483.1 2164 g20488 i0 76 0.75 25 6 38.3 0 75 1 79 103 MDD1775483.1 CPBP family intramembrane metalloprotease [Methanobacterium sp.] diamond 147 45.1 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;