RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA591127", tax_clade = "Haptista" and tax_superkingdom = "Eukaryota"

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analysis 2

tax_superkingdom 1

  • Eukaryota · 3 ✖

tax_phylum 1

tax_clade 1

  • Haptista · 3 ✖

bioproject 1

  • PRJNA591127 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23517451 23517451 PRJNA591127_P_NODE_24839_length_169_cov_3.431818_g24670_i0 PRJNA591127 24839 169 3.431818 5.79977242 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 145 2.26e-30   NTclustered gi|551606591|ref|XM_005784584.1| 280463 g24670 i0 94.624 64.207100591716 93 5 55 0 1 93 176 84 Emiliania huxleyi CCMP1516 hypothetical protein mRNA blastn 10851 145 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
26731124 26731124 PRJNA591127_P_NODE_12301_length_210_cov_1.820809_g12132_i0 PRJNA591127 12301 210 1.820809 3.8236989 Emiliania huxleyi CCMP1516 280463 Haptophyta other_Eukaryota 45.1 0.00102   NR XP_005782836.1 280463 g12132 i0 43.7 1.24285714285714 87 28 94.3 3 198 1 11 97 XP_005782836.1 hypothetical protein EMIHUDRAFT_442529 [Emiliania huxleyi CCMP1516] diamond 261 45.1 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
27187798 27187798 PRJNA591127_P_NODE_30282_length_151_cov_2.991228_g30113_i0 PRJNA591127 30282 151 2.991228 4.51675428 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 48.5 9.71e-5   NR KAL1529370.1 97485 g30113 i0 60.9 6.41721854304636 46 14 91.4 2 13 150 303 344 KAL1529370.1 hypothetical protein AB1Y20_000322 [Prymnesium parvum] diamond 969 48.5 1 Eukaryota Haptista   Haptophyta   Prymnesiales Prymnesiaceae Prymnesium Prymnesium parvum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;