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contig_metadata

15 rows where bioproject = "PRJNA591127" and tax_clade = "Amoebozoa"

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tax_phylum 3

analysis 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 15 ✖

bioproject 1

  • PRJNA591127 · 15 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1138889 1138889 PRJNA591127_P_NODE_31001_length_151_cov_1.368421_g30832_i0 PRJNA591127 31001 151 1.368421 2.06631571 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 196 5.38e-46   NTclustered gi|330902891|gb|JF298270.1| 313997 g30832 i0 90.541 93.9139072847682 148 14 98 0 1 148 502 649 Cochliopodium minus clone 5201 actin gene, partial cds blastn 14181 196 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
5668820 5668820 PRJNA591127_P_NODE_23865_length_175_cov_3.659420_g23696_i0 PRJNA591127 23865 175 3.65942 6.403985 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 169 1.4e-37   NTclustered gi|300078498|gb|GU001160.1| 5755 g23696 i0 87.838 34.2571428571429 148 12 85 2 28 175 5596 5455 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 5995 169 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
8218292 8218292 PRJNA591127_P_NODE_28187_length_153_cov_1.379310_g28018_i0 PRJNA591127 28187 153 1.37931 2.1103443 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 95.1 1.97e-21   NR ABQ41411.1 435424 g28018 i0 88 15.6862745098039 50 6 98 0 152 3 279 328 ABQ41411.1 elongation factor 1A, partial [Soliformovum irregulare] diamond 2400 95.1 1 Eukaryota Amoebozoa   Evosea Variosea Fractovitellida Soliformoviidae Soliformovum Soliformovum irregulare
10067386 10067386 PRJNA591127_P_NODE_26228_length_162_cov_1.568000_g26059_i0 PRJNA591127 26228 162 1.568 2.54016 Vannellidae 95227 Discosea other_Eukaryota 296 5.64e-76   NTclustered gi|33946343|gb|AY294150.1| 197527 g26059 i0 99.383 100.592592592593 162 1 100 0 1 162 1574 1413 Platyamoeba placida small subunit ribosomal RNA gene, partial sequence blastn 16296 296 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Platyamoeba Platyamoeba placida
10769237 10769237 PRJNA591127_P_NODE_11029_length_221_cov_7.657609_g10860_i0 PRJNA591127 11029 221 7.657609 16.92331589 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 243 1.08e-59   NTclustered gi|300078498|gb|GU001160.1| 5755 g10860 i0 86.9 1.03619909502262 229 14 100 11 1 221 5708 5928 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 229 243 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
10769356 10769356 PRJNA591127_P_NODE_25129_length_168_cov_1.175573_g24960_i0 PRJNA591127 25129 168 1.175573 1.97496264 Echinamoeba silvestris 1215984 Tubulinea other_Eukaryota 305 9.81e-79   NTclustered gi|399764170|gb|JQ271681.1| 1215984 g24960 i0 99.405 12.0654761904762 168 1 100 0 1 168 535 368 Echinamoeba silvestris strain UKNCC:CCAP1519/1 18S ribosomal RNA gene, partial sequence blastn 2027 305 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida   Echinamoebidae Echinamoeba Echinamoeba silvestris
18417016 18417016 PRJNA591127_P_NODE_3775_length_372_cov_1.432836_g3607_i0 PRJNA591127 3775 372 1.432836 5.33014992 Amoebozoa sp. 1892891 Root_unresolved Root_unresolved 335 3.139999999999999e-87   NTclustered gi|1523769291|gb|MH535936.1| 1892891 g3607 i0 83.245 94.8494623655914 376 51 99 9 3 371 495 865 Amoebozoa sp. strain 49TGR cytochrome c oxidase subunit 1 (COI) gene, partial cds; mitochondrial blastn 35284 335 1 Eukaryota Amoebozoa             Amoebozoa sp.
19691590 19691590 PRJNA591127_P_NODE_8696_length_249_cov_12.750000_g8528_i0 PRJNA591127 8696 249 12.75 31.7475 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 265 2.6599999999999997e-66   NTclustered gi|300078498|gb|GU001160.1| 5755 g8528 i0 86.122 1.15261044176707 245 27 98 3 7 249 7831 7592 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 287 265 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
23517565 23517565 PRJNA591127_P_NODE_8639_length_250_cov_9.539906_g8471_i0 PRJNA591127 8639 250 9.539906 23.849765 Vannella sp. ACN1 1215628 Discosea other_Eukaryota 462 8.83e-126   NTclustered gi|399764213|gb|JQ271724.1| 1215628 g8471 i0 100 94.488 250 0 100 0 1 250 130 379 Vannella sp. ACN1 18S ribosomal RNA gene, partial sequence blastn 23622 462 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. ACN1
24791271 24791271 PRJNA591127_P_NODE_25920_length_163_cov_5.095238_g25751_i0 PRJNA591127 25920 163 5.095238 8.30523794 Entamoeba gingivalis 38877 Evosea other_Eukaryota 302 1.22e-77   NTclustered gi|2500758944|gb|OQ932784.1| 38877 g25751 i0 100 95.361963190184 163 0 100 0 1 163 98 260 Entamoeba gingivalis strain Subtype ST1 small subunit ribosomal RNA gene, partial sequence blastn 15544 302 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba gingivalis
27282896 27282896 PRJNA591127_P_NODE_3423_length_388_cov_1.834758_g3255_i0 PRJNA591127 3423 388 1.8347579999999999 7.11886104 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 99 8.66e-24   NR XP_003283857.1 5786 g3255 i0 43.5 3.43298969072165 108 53 83.5 1 364 41 16 115 XP_003283857.1 40S ribosomal protein S20 [Dictyostelium purpureum] diamond 1332 99.4 0.995975855130785 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
27680258 27680258 PRJNA591127_P_NODE_25644_length_165_cov_1.648438_g25475_i0 PRJNA591127 25644 165 1.648438 2.7199227 Entamoeba histolytica HM-1:IMSS 294381 Evosea other_Eukaryota 51.2 1.26e-6   NR XP_656837.1 294381 g25475 i0 50.9 1 55 27 100 0 1 165 20 74 XP_656837.1 actobindin, putative [Entamoeba histolytica HM-1:IMSS] diamond 165 51.2 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba histolytica
28198400 28198400 PRJNA591127_P_NODE_26746_length_159_cov_3.532787_g26577_i0 PRJNA591127 26746 159 3.532787 5.61713133 Acytosteliaceae 2058183 Evosea other_Eukaryota 68.2 1.22e-11   NR XP_020431823.1 670386 g26577 i0 52.9 1.92452830188679 51 24 96.2 0 154 2 92 142 XP_020431823.1 glutathione S-transferase domain-containing protein [Heterostelium album PN500] diamond 306 68.2 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
28816328 28816328 PRJNA591127_P_NODE_12448_length_208_cov_5.929825_g12279_i0 PRJNA591127 12448 208 5.929825 12.334036 Dictyostelium discoideum AX4 352472 Evosea other_Eukaryota 45.8 0.00189   NR XP_638859.1 352472 g12279 i0 43.5 1.84615384615385 62 32 85.1 2 181 5 3 64 XP_638859.1 cysteine proteinase 3 [Dictyostelium discoideum AX4] diamond 384 45.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
29700290 29700290 PRJNA591127_P_NODE_9490_length_239_cov_1.698020_g9322_i0 PRJNA591127 9490 239 1.69802 4.0582678 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 61.6 4.79e-9   NR KAH3764538.1 1580589 g9322 i0 45.7 0.878661087866109 70 37 87.9 1 211 2 164 232 KAH3764538.1 hypothetical protein Pelo_3644 [Pelomyxa schiedti] diamond 210 61.6 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;