RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA591000" and tax_phylum = "Streptophyta"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Streptophyta · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA591000 · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5668672 5668672 PRJNA591000_P_NODE_8525_length_476_cov_2.521253_g7001_i0 PRJNA591000 8525 476 2.521253 12.00116428 Luculia yunnanensis 1043446 Plants Plants 52.8 0.046   NTclustered gi|363453795|gb|JN871303.1| 1043446 g7001 i0 96.774 0.0651260504201681 31 1 7 0 209 239 59 89 Luculia yunnanensis clone MH8 microsatellite sequence blastn 31 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Gentianales Rubiaceae Luculia Luculia yunnanensis
6943102 6943102 PRJNA591000_P_NODE_9806_length_449_cov_1.216667_g8246_i0 PRJNA591000 9806 449 1.216667 5.46283483 Brassica rapa 3711 Plants Plants 54.7 0.012   NTclustered gi|1516514802|emb|LR031571.1| 3711 g8246 i0 96.97 0.0734966592427617 33 0 7 1 266 297 35487851 35487883 Brassica rapa genome, scaffold: A01 blastn 33 54.7 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Brassicales Brassicaceae Brassica Brassica rapa
10769215 10769215 PRJNA591000_P_NODE_6529_length_554_cov_3.405714_g5173_i0 PRJNA591000 6529 554 3.405714 18.86765556 Olea europaea 4146 Plants Plants 58.4 0.001   NTclustered gi|1279052678|ref|XM_023032426.1| 158386 g5173 i0 100 0.173285198555957 31 0 6 0 223 253 505 475 PREDICTED: Olea europaea var. sylvestris QWRF motif-containing protein 2-like (LOC111403807), transcript variant X1, mRNA blastn 96 58.4 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Lamiales Oleaceae Olea Olea europaea
11341969 11341969 PRJNA591000_P_NODE_8049_length_491_cov_0.915584_g6543_i0 PRJNA591000 8049 491 0.915584 4.49551744 Pinopsida 58019 Plants Plants 211 7.47e-50   NTclustered gi|9187620|emb|AJ271027.1| 99814 g6543 i0 100 56.4908350305499 114 0 52 0 378 491 1143 1256 Sequoiadendron giganteum partial 25S rRNA gene blastn 27737 211 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Cupressales Cupressaceae Sequoiadendron Sequoiadendron giganteum
14593771 14593771 PRJNA591000_P_NODE_5432_length_629_cov_1.120000_g4279_i0 PRJNA591000 5432 629 1.12 7.0448 Aegilops tauschii 37682 Plants Plants 185 5.9e-42   NTclustered gi|2158011104|ref|XM_040387116.2| 200361 g4279 i0 96.46 0.518282988871224 113 2 25 1 518 628 3224 3112 PREDICTED: Aegilops tauschii subsp. strangulata uncharacterized LOC109768744 (LOC109768744), transcript variant X1, mRNA blastn 326 185 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Aegilops Aegilops tauschii
17142580 17142580 PRJNA591000_P_NODE_7434_length_512_cov_2.018634_g5970_i0 PRJNA591000 7434 512 2.018634 10.33540608 Gossypium hirsutum 3635 Plants Plants 56.5 0.004   NTclustered gi|2029608215|ref|XM_016853041.2| 3635 g5970 i0 100 0.171875 30 0 6 0 35 64 723 694 PREDICTED: Gossypium hirsutum non-specific lipid transfer protein GPI-anchored 7 (LOC107922847), mRNA blastn 88 56.5 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Malvales Malvaceae Gossypium Gossypium hirsutum
20967103 20967103 PRJNA591000_P_NODE_15937_length_191_cov_4.154321_g14331_i0 PRJNA591000 15937 191 4.154321 7.93475311 Pistacia vera 55513 Plants Plants 54.7 0.005   NTclustered gi|1768556770|ref|XM_031400282.1| 55513 g14331 i0 87.5 0.691099476439791 48 4 25 2 122 168 335 381 PREDICTED: Pistacia vera acanthoscurrin-2-like (LOC116114127), mRNA blastn 132 54.7 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Sapindales Anacardiaceae Pistacia Pistacia vera
27346215 27346215 PRJNA591000_P_NODE_9863_length_448_cov_0.980907_g8302_i0 PRJNA591000 9863 448 0.980907 4.39446336 root 1 Root_unresolved Root_unresolved 50.8 4.64e-4   NR CAM6001132.1 128184 g8302 i0 53.3 0.803571428571429 45 18 28.1 1 128 3 612 656 CAM6001132.1 unnamed protein product [Sphagnum balticum] diamond 360 51.2 0.9921875 Eukaryota Embryophyta Viridiplantae Streptophyta Sphagnopsida Sphagnales Sphagnaceae Sphagnum Sphagnum balticum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;