RNAquarium Metadata Server
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contig_metadata

10 rows where bioproject = "PRJNA591000" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 10 ✖

tax_kingdom 1

bioproject 1

  • PRJNA591000 · 10 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26699653 26699653 PRJNA591000_P_NODE_7921_length_495_cov_1.435622_g6419_i0 PRJNA591000 7921 495 1.435622 7.1063289 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 53.1 9.22e-5   NR MEI7672487.1 2026735 g6419 i0 63.9 0.218181818181818 36 13 21.8 0 483 376 199 234 MEI7672487.1 DUF5309 family protein [Deltaproteobacteria bacterium] diamond 108 53.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
27819877 27819877 PRJNA591000_P_NODE_16724_length_154_cov_2.144000_g15118_i0 PRJNA591000 16724 154 2.144 3.30176 root 1 Root_unresolved Root_unresolved 40.4 0.00892   NR MDB4278727.1 2026735 g15118 i0 56.3 1.94805194805195 32 14 62.3 0 97 2 7 38 MDB4278727.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 300 40.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
28847986 28847986 PRJNA591000_P_NODE_15588_length_255_cov_3.075221_g13982_i0 PRJNA591000 15588 255 3.075221 7.84181355 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 60.5 2.41e-8   NR MBW1954010.1 2026735 g13982 i0 57.1 1.56470588235294 63 25 72.9 2 199 14 229 290 MBW1954010.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 399 60.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
29385049 29385049 PRJNA591000_P_NODE_11909_length_419_cov_0.956410_g10323_i0 PRJNA591000 11909 419 0.95641 4.0073579 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 53.5 2.34e-6   NR MBW2094185.1 2026735 g10323 i0 52.4 0.300715990453461 42 20 30.1 0 289 414 8 49 MBW2094185.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 126 53.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
29542702 29542702 PRJNA591000_P_NODE_6750_length_541_cov_3.144531_g5369_i0 PRJNA591000 6750 541 3.144531 17.01191271 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 61.6 4.19e-8   NR MCH7913942.1 2026735 g5369 i0 61.7 0.537892791127542 47 18 26.1 0 144 4 3 49 MCH7913942.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 291 61.6 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
29903701 29903701 PRJNA591000_P_NODE_3471_length_760_cov_1.662107_g2697_i0 PRJNA591000 3471 760 1.662107 12.6320132 root 1 Root_unresolved Root_unresolved 92 1.86e-17   NR MCP4669291.1 2026735 g2697 i0 38.4 1.14473684210526 146 43 56.8 3 497 66 269 369 MCP4669291.1 terminase [Deltaproteobacteria bacterium] diamond 870 92 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
31027733 31027733 PRJNA591000_P_NODE_7455_length_511_cov_3.838174_g5987_i0 PRJNA591000 7455 511 3.838174 19.61306914 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 58.2 2.18e-6   NR RJR38676.1 2026735 g5987 i0 32.7 0.610567514677104 104 67 61.1 3 196 507 343 443 RJR38676.1 MAG: hypothetical protein C4567_12405 [Deltaproteobacteria bacterium] diamond 312 58.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
31818022 31818022 PRJNA591000_P_NODE_16417_length_163_cov_2.947761_g14811_i0 PRJNA591000 16417 163 2.947761 4.80485043 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 60.8 2.23e-9   NR MDC0152409.1 2026735 g14811 i0 61.1 0.993865030674847 54 16 99.4 1 162 1 74 122 MDC0152409.1 Ig-like domain-containing protein [Deltaproteobacteria bacterium] diamond 162 60.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
32197812 32197812 PRJNA591000_P_NODE_6198_length_574_cov_4.077064_g4899_i0 PRJNA591000 6198 574 4.077064 23.40234736 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 57 5.4e-6   NR MBM4251029.1 2026735 g4899 i0 42.4 0.344947735191638 66 35 32.9 1 190 2 4 69 MBM4251029.1 F0F1 ATP synthase subunit A [Deltaproteobacteria bacterium] diamond 198 57 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
32324662 32324662 PRJNA591000_P_NODE_11899_length_419_cov_1.130769_g10313_i0 PRJNA591000 11899 419 1.130769 4.73792211 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 64.7 5.44e-9   NR MCC6160389.1 2026735 g10313 i0 100 0.221957040572792 31 0 22.2 0 386 294 132 162 MCC6160389.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 93 64.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;