RNAquarium Metadata Server
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contig_metadata

10 rows where bioproject = "PRJNA591000" and tax_phylum = "Heterolobosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 10 ✖

tax_clade 1

bioproject 1

  • PRJNA591000 · 10 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2414019 2414019 PRJNA591000_P_NODE_3622_length_749_cov_4.630556_g2820_i0 PRJNA591000 3622 749 4.630556 34.68286444 Naegleria 5761 Heterolobosea other_Eukaryota 739 0   NTclustered gi|38606345|gb|AY376153.1| 5762 g2820 i0 95.662 42.1361815754339 461 19 82 1 277 736 364 824 Naegleria gruberi isolate 7860 small subunit ribosomal RNA gene, partial sequence; mitochondrial blastn 31560 739 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
6943095 6943095 PRJNA591000_P_NODE_14346_length_390_cov_1.573407_g12748_i0 PRJNA591000 14346 390 1.573407 6.1362873 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 158 7.6799999999999995e-34   NTclustered gi|11466174|ref|NC_002573.1| 5762 g12748 i0 97.802 1.74102564102564 91 2 39 0 19 109 667 757 Naegleria gruberi mitochondrion, complete genome blastn 679 158 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
8791427 8791427 PRJNA591000_P_NODE_2387_length_857_cov_27.387681_g1784_i0 PRJNA591000 2387 857 27.387681 234.71242617 Naegleria 5761 Heterolobosea other_Eukaryota 806 0   NTclustered gi|2351573|gb|U80061.1|NJU80061 36335 g1784 i0 98.886 93.3127187864644 449 5 95 0 387 835 1421 1869 Naegleria jamiesoni 18S ribosomal RNA gene, partial sequence blastn 79969 806 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria jamiesoni
11341966 11341966 PRJNA591000_P_NODE_16529_length_159_cov_5.184615_g14923_i0 PRJNA591000 16529 159 5.184615 8.24353785 Naegleria 5761 Heterolobosea other_Eukaryota 215 1.59e-51   NTclustered gi|2618963742|gb|OR769034.1| 5762 g14923 i0 93.151 9.84276729559748 146 10 92 0 14 159 5719 5574 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 1565 215 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
11341967 11341967 PRJNA591000_P_NODE_3709_length_743_cov_1.109244_g2893_i0 PRJNA591000 3709 743 1.109244 8.24168292 Naegleria 5761 Heterolobosea other_Eukaryota 270 1.89e-67   NTclustered gi|38606345|gb|AY376153.1| 5762 g2893 i0 98.065 12.7321668909825 155 3 33 0 301 455 1161 1315 Naegleria gruberi isolate 7860 small subunit ribosomal RNA gene, partial sequence; mitochondrial blastn 9460 270 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
12617701 12617701 PRJNA591000_P_NODE_6470_length_558_cov_2.827977_g5123_i0 PRJNA591000 6470 558 2.827977 15.78011166 Naegleria 5761 Heterolobosea other_Eukaryota 634 4.29e-177   NTclustered gi|2651357780|gb|PP174296.1| 36333 g5123 i0 98.873 43.3548387096774 355 4 73 0 1 355 2493 2847 Naegleria clarki isolate P2881 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 24192 640 0.990625 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria clarki
13318905 13318905 PRJNA591000_P_NODE_4711_length_678_cov_3.112481_g3725_i0 PRJNA591000 4711 678 3.112481 21.10262118 Naegleria lovaniensis 51637 Heterolobosea other_Eukaryota 128 1.09e-24   NTclustered gi|2119437446|ref|XM_044694071.1| 51637 g3725 i0 84.058 0.407079646017699 138 17 40 3 86 219 452 316 Naegleria lovaniensis uncharacterized protein (C9374_004432), partial mRNA blastn 276 128 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis
14593770 14593770 PRJNA591000_P_NODE_4932_length_663_cov_84.231861_g3578_i1 PRJNA591000 4932 663 84.231861 558.45723843 Naegleria jamiesoni 36335 Heterolobosea other_Eukaryota 797 0   NTclustered gi|2351573|gb|U80061.1|NJU80061 36335 g3578 i1 94.912 87.2533936651584 511 23 89 3 140 648 1216 707 Naegleria jamiesoni 18S ribosomal RNA gene, partial sequence blastn 57849 797 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria jamiesoni
22242054 22242054 PRJNA591000_P_NODE_4518_length_690_cov_80.583964_g3578_i0 PRJNA591000 4518 690 80.583964 556.0293516 Naegleria jamiesoni 36335 Heterolobosea other_Eukaryota 797 0   NTclustered gi|2351573|gb|U80061.1|NJU80061 36335 g3578 i0 94.912 77.4985507246377 511 23 81 3 167 675 1216 707 Naegleria jamiesoni 18S ribosomal RNA gene, partial sequence blastn 53474 797 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria jamiesoni
29353487 29353487 PRJNA591000_P_NODE_6169_length_576_cov_1.749543_g4876_i0 PRJNA591000 6169 576 1.749543 10.07736768 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 71.2 1.34e-10   NR XP_002683406.1 5762 g4876 i0 59.2 0.255208333333333 49 20 25.5 0 147 1 724 772 XP_002683406.1 jmjC domain-containing protein [Naegleria gruberi] diamond 147 71.2 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;