RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA591000" and tax_clade = "Sar"

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tax_phylum 2

analysis 2

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA591000 · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
564958 564958 PRJNA591000_P_NODE_10121_length_443_cov_1.434783_g8555_i0 PRJNA591000 10121 443 1.434783 6.35608869 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 152 4.1099999999999996e-32   NTclustered gi|325179460|emb|FR824046.1| 890382 g8555 i0 94.898 22.4085778781038 98 4 22 1 262 358 189331 189428 Albugo laibachii Nc14, genomic contig CONTIG_1_NC14_v4_580768_240 blastn 9927 152 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
28135544 28135544 PRJNA591000_P_NODE_10625_length_435_cov_3.068966_g9050_i0 PRJNA591000 10625 435 3.068966 13.3500021 root 1 Root_unresolved Root_unresolved 54.7 8.85e-6   NR KAI2505282.1 210448 g9050 i0 33.3 3.18620689655172 117 50 61.4 2 169 435 78 194 KAI2505282.1 hypothetical protein MHU86_9184 [Fragilaria crotonensis] diamond 1386 54.7 1 Eukaryota Sar   Bacillariophyta Fragilariophyceae Fragilariales Fragilariaceae Fragilaria Fragilaria crotonensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;