RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA591000", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA591000 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31311968 31311968 PRJNA591000_P_NODE_7395_length_513_cov_7.739669_g5936_i0 PRJNA591000 7395 513 7.739669 39.70450197 Longimicrobium sp. 2029185 Bacteria Bacteria 48.1 0.00639   NR HVG45772.1 2029185 g5936 i0 28.6 1.39766081871345 119 78 69 4 2 355 169 281 HVG45772.1 penicillin-binding transpeptidase domain-containing protein [Longimicrobium sp.] diamond 717 48.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
31438432 31438432 PRJNA591000_P_NODE_10576_length_436_cov_2.154791_g9002_i0 PRJNA591000 10576 436 2.154791 9.39488876 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 63.9 1.13e-8   NR MEE8551508.1 2026742 g9002 i0 52.6 0.392201834862385 57 26 39.2 1 172 2 409 464 MEE8551508.1 phage tail tube protein [Gemmatimonadota bacterium] diamond 171 63.9 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;