RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA591000", tax_clade = "FCB group" and tax_phylum = "Fibrobacterota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Fibrobacterota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA591000 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28184865 28184865 PRJNA591000_P_NODE_12006_length_418_cov_0.961440_g10420_i0 PRJNA591000 12006 418 0.96144 4.0188192 Fibrobacteria bacterium 2725311 Bacteria Bacteria 84.7 1.47e-17   NR HNY31751.1 2725311 g10420 i0 83.6 0.394736842105263 55 9 39.5 0 418 254 109 163 HNY31751.1 hypothetical protein [Fibrobacteria bacterium] diamond 165 84.7 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria       Fibrobacteria bacterium
30996038 30996038 PRJNA591000_P_NODE_10494_length_437_cov_2.259804_g8920_i0 PRJNA591000 10494 437 2.259804 9.87534348 Fibrobacterota bacterium 2052160 Bacteria Bacteria 50.8 3.86e-4   NR MBK9580252.1 2052160 g8920 i0 66.7 0.247139588100687 36 12 24.7 0 272 379 257 292 MBK9580252.1 PBSX family phage terminase large subunit [Fibrobacterota bacterium] diamond 108 50.8 1 Bacteria FCB group Pseudomonadati Fibrobacterota         Fibrobacterota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;