RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA591000", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Parcubacteria"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Parcubacteria · 4 ✖

tax_clade 1

  • Bacteria candidate phyla · 4 ✖

bioproject 1

  • PRJNA591000 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26763166 26763166 PRJNA591000_P_NODE_321_length_1522_cov_5.908908_g219_i0 PRJNA591000 321 1522 5.908908 89.93357976 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 153 1.12e-39   NR RMD60175.1 2762014 g219 i0 55.7 0.258212877792378 131 56 25.4 1 473 859 1 131 RMD60175.1 MAG: hypothetical protein D6833_10260 [Candidatus Parcubacteria bacterium] diamond 393 153 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium
27111139 27111139 PRJNA591000_P_NODE_15402_length_346_cov_4.091483_g13796_i0 PRJNA591000 15402 346 4.091483 14.15653118 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 78.6 1.02e-15   NR RMD51067.1 2762014 g13796 i0 61 0.511560693641618 59 23 51.2 0 177 1 3 61 RMD51067.1 MAG: hypothetical protein D6827_02940 [Candidatus Parcubacteria bacterium] diamond 177 78.6 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium
31027732 31027732 PRJNA591000_P_NODE_515_length_1353_cov_10.368580_g350_i0 PRJNA591000 515 1353 10.36858 140.2868874 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 141 3.75e-32   NR MFM2357274.1 2762014 g350 i0 45.6 0.481152993348115 217 109 47.2 6 654 1292 27 238 MFM2357274.1 hypothetical protein [Candidatus Parcubacteria bacterium] diamond 651 141 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium
31691544 31691544 PRJNA591000_P_NODE_1557_length_984_cov_4.826178_g1118_i0 PRJNA591000 1557 984 4.826178 47.48959152 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 75.5 6.37e-13   NR RJQ29183.1 2762014 g1118 i0 45.1 0.579268292682927 102 44 27.7 4 429 157 3 103 RJQ29183.1 MAG: hypothetical protein C4571_01985 [Candidatus Parcubacteria bacterium] diamond 570 75.5 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;