RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA588137" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA588137 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28437820 28437820 PRJNA588137_S_NODE_9706_length_244_cov_0.900585_g9673_i0 PRJNA588137 9706 244 0.900585 2.1974274 Chloroflexota bacterium 2026724 Bacteria Bacteria 118 9.239999999999999e-30   NR MDQ3655775.1 2026724 g9673 i0 72.5 1.94262295081967 80 22 98.4 0 244 5 122 201 MDQ3655775.1 gamma-glutamyltransferase family protein [Chloroflexota bacterium] diamond 474 118 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
32640114 32640114 PRJNA588137_S_NODE_9040_length_245_cov_0.895349_g9007_i0 PRJNA588137 9040 245 0.895349 2.19360505 Roseiflexus castenholzii 120962 Bacteria Bacteria 91.7 2.33e-19   NR WP_011997801.1 120962 g9007 i0 64.9 5.62040816326531 77 22 93.1 2 5 232 139 211 WP_011997801.1 RCC1 domain-containing protein [Roseiflexus castenholzii] diamond 1377 91.7 1 Bacteria   Bacillati Chloroflexota Chloroflexia Chloroflexales Roseiflexaceae Roseiflexus Roseiflexus castenholzii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;