RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA588137", tax_phylum = "Campylobacterota" and tax_superkingdom = "Bacteria"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA588137 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1138462 1138462 PRJNA588137_S_NODE_4261_length_288_cov_2.148837_g4228_i0 PRJNA588137 4261 288 2.148837 6.18865056 Pseudomonadati 3379134 Bacteria Bacteria 527 3.63e-145   NTclustered gi|21624594|gb|AF439786.3| 197 g4228 i0 99.653 142.704861111111 288 1 100 0 1 288 219 506 Campylobacter jejuni isolate B7W3 integron INTI1 IntI1 gene, partial cds; aminoglycoside 6'-N-acetyltransferase (aacA4) gene, aac-(6')-Ib allele, complete cds; and unknown gene blastn 41099 527 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni
19691190 19691190 PRJNA588137_S_NODE_8636_length_246_cov_0.890173_g8603_i0 PRJNA588137 8636 246 0.890173 2.18982558 Campylobacter concisus 199 Bacteria Bacteria 444 3.14e-120   NTclustered gi|2699822930|gb|CP147773.1| 199 g8603 i0 99.187 24.5528455284553 246 2 100 0 1 246 1718907 1719152 Campylobacter concisus strain RMIT-O23 chromosome blastn 6040 444 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter concisus
30851410 30851410 PRJNA588137_S_NODE_4014_length_294_cov_1.054299_g3981_i0 PRJNA588137 4014 294 1.054299 3.09963906 root 1 Root_unresolved Root_unresolved 51.2 1.17e-5   NR WP_238408432.1 210 g3981 i0 74.2 3.47959183673469 31 8 31.6 0 147 239 30 60 WP_238408432.1 DUF1398 family protein, partial [Helicobacter pylori] diamond 1023 51.2 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;