RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA588137", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA588137 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26826669 26826669 PRJNA588137_S_NODE_2241_length_352_cov_1.103943_g2208_i0 PRJNA588137 2241 352 1.103943 3.88587936 Chthoniobacterales bacterium 2201154 Bacteria Bacteria 62.8 1.02e-8   NR HEV3410536.1 2201154 g2208 i0 45.3 0.545454545454545 64 35 54.5 0 198 7 21 84 HEV3410536.1 fatty acid desaturase [Chthoniobacterales bacterium] diamond 192 62.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales     Chthoniobacterales bacterium
32229599 32229599 PRJNA588137_S_NODE_7058_length_250_cov_0.870056_g7025_i0 PRJNA588137 7058 250 0.870056 2.17514 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 138 1.1199999999999999e-40   NR MEN9404541.1 2026799 g7025 i0 93.2 0.876 73 5 87.6 0 221 3 1 73 MEN9404541.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 219 138 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
32243209 32243209 PRJNA588137_S_NODE_7978_length_248_cov_0.880000_g7945_i0 PRJNA588137 7978 248 0.88 2.1824 Verrucomicrobiota 74201 Bacteria Bacteria 86.7 3.49e-18   NR WP_170266573.1 748831 g7945 i0 58.2 3.32661290322581 67 28 81 0 46 246 218 284 WP_170266573.1 DMT family transporter [Brevifollis gellanilyticus] diamond 825 87 0.996551724137931 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Brevifollis Brevifollis gellanilyticus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;