RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA588137", tax_clade = "FCB group" and tax_phylum = "Rhodothermota"

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tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA588137 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22241901 22241901 PRJNA588137_S_NODE_7718_length_248_cov_0.880000_g7685_i0 PRJNA588137 7718 248 0.88 2.1824 Rhodothermales bacterium 2306054 Bacteria Bacteria 130 3.6899999999999996e-34   NR HEX7069156.1 2306054 g7685 i0 81.7 0.991935483870968 82 15 99.2 0 2 247 52 133 HEX7069156.1 ADP-forming succinate--CoA ligase subunit beta [Rhodothermales bacterium] diamond 246 130 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales     Rhodothermales bacterium
25364808 25364808 PRJNA588137_S_NODE_9500_length_244_cov_0.900585_g9467_i0 PRJNA588137 9500 244 0.900585 2.1974274 Rhodothermales bacterium 2306054 Bacteria Bacteria 107 5.66e-25   NR HLA64202.1 2306054 g9467 i0 71.6 0.909836065573771 74 21 91 0 23 244 273 346 HLA64202.1 FHA domain-containing protein [Rhodothermales bacterium] diamond 222 107 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales     Rhodothermales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;