RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA588137", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 3 ✖

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA588137 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27585178 27585178 PRJNA588137_S_NODE_4704_length_279_cov_2.475728_g4671_i0 PRJNA588137 4704 279 2.475728 6.90728112 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 147 7.26e-43   NR XP_004349731.1 1257118 g4671 i0 70.7 0.989247311827957 92 27 98.9 0 4 279 15 106 XP_004349731.1 ribosomal protein S13p/S18e, putative [Acanthamoeba castellanii str. Neff] diamond 276 147 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27900760 27900760 PRJNA588137_S_NODE_6645_length_251_cov_0.865169_g6612_i0 PRJNA588137 6645 251 0.865169 2.17157419 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 67.8 4.21e-11   NR XP_004337970.1 1257118 g6612 i0 42.4 1.01593625498008 85 44 95.6 1 8 247 181 265 XP_004337970.1 CBS domain containing protein [Acanthamoeba castellanii str. Neff] diamond 255 67.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31691540 31691540 PRJNA588137_S_NODE_5397_length_266_cov_1.196891_g5364_i0 PRJNA588137 5397 266 1.196891 3.18373006 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 136 1.04e-38   NR XP_004333797.1 1257118 g5364 i0 80.7 6.94736842105263 88 15 99.2 1 1 264 32 117 XP_004333797.1 ADPribosylation factor, putative [Acanthamoeba castellanii str. Neff] diamond 1848 136 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;