RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA577580" and tax_phylum = "Parabasalia"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 8 ✖

tax_clade 1

bioproject 1

  • PRJNA577580 · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9492394 9492394 PRJNA577580_P_NODE_12228_length_265_cov_1.307292_g12150_i0 PRJNA577580 12228 265 1.307292 3.4643238 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 62.1 4.02e-5   NTclustered gi|2806452230|ref|XM_068501058.1| 1144522 g12150 i0 89.583 0.520754716981132 48 5 18 0 217 264 544 591 Tritrichomonas foetus uncharacterized protein (TRFO_19864), partial mRNA blastn 138 62.1 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
22241189 22241189 PRJNA577580_P_NODE_8938_length_304_cov_1.718615_g8860_i0 PRJNA577580 8938 304 1.718615 5.2245896 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 147 8.68e-40   NR AIL82371.1 43352 g8860 i0 65 71.0526315789474 100 35 98.7 0 302 3 212 311 AIL82371.1 beta-tubulin 2, partial [Dientamoeba fragilis] diamond 21600 148 0.993243243243243 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Dientamoeba Dientamoeba fragilis
26681553 26681553 PRJNA577580_P_NODE_14021_length_251_cov_0.876404_g13943_i0 PRJNA577580 14021 251 0.876404 2.19977404 root 1 Root_unresolved Root_unresolved 108 3.43e-26   NR XP_068360430.1 1144522 g13943 i0 61.7 2.85657370517928 81 31 96.8 0 246 4 184 264 XP_068360430.1 serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Tritrichomonas foetus] diamond 717 109 0.990825688073395 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
26890054 26890054 PRJNA577580_P_NODE_5561_length_379_cov_2.215686_g5483_i0 PRJNA577580 5561 379 2.215686 8.39744994 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 60.8 7.61e-8   NR XP_068358926.1 1144522 g5483 i0 52 0.395778364116095 50 22 39.6 1 356 207 248 295 XP_068358926.1 uncharacterized protein TRFO_26388 [Tritrichomonas foetus] diamond 150 60.8 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
27680210 27680210 PRJNA577580_P_NODE_13204_length_255_cov_2.186813_g13126_i0 PRJNA577580 13204 255 2.186813 5.57637315 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 71.6 1.66e-12   NR XP_067777127.1 135588 g13126 i0 45.8 0.976470588235294 83 43 95.3 2 1 243 49 131 XP_067777127.1 Calreticulin family protein [Histomonas meleagridis] diamond 249 71.6 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
27743330 27743330 PRJNA577580_P_NODE_3644_length_472_cov_1.323308_g3566_i0 PRJNA577580 3644 472 1.323308 6.24601376 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 63.5 1.62e-9   NR XP_067771982.1 135588 g3566 i0 45.9 4.91313559322034 74 38 45.8 1 1 216 10 83 XP_067771982.1 C2 domain containing protein [Histomonas meleagridis] diamond 2319 63.9 0.993740219092332 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
31659733 31659733 PRJNA577580_P_NODE_12957_length_258_cov_1.448649_g12879_i0 PRJNA577580 12957 258 1.448649 3.73751442 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 44.3 0.00961   NR XP_001313314.1 412133 g12879 i0 48.5 0.383720930232558 33 17 38.4 0 258 160 69 101 XP_001313314.1 RNA polymerase II transcription regulator recruiting protein [Trichomonas vaginalis G3] diamond 99 44.3 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
32811203 32811203 PRJNA577580_P_NODE_7800_length_323_cov_1.608000_g7722_i0 PRJNA577580 7800 323 1.608 5.19384 root 1 Root_unresolved Root_unresolved 71.2 9.05e-12   NR XP_068355675.1 1144522 g7722 i0 39.2 4.82043343653251 102 57 94.7 3 307 2 143 239 XP_068355675.1 uncharacterized protein TRFO_30261 [Tritrichomonas foetus] diamond 1557 71.2 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;