RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA577580", tax_kingdom = "Fungi" and tax_phylum = "Olpidiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Olpidiomycota · 3 ✖

tax_kingdom 1

  • Fungi · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA577580 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8790920 8790920 PRJNA577580_P_NODE_1367_length_774_cov_2.609130_g1298_i0 PRJNA577580 1367 774 2.60913 20.1946662 Eukaryota 2759 Fungi Fungi 394 2.46e-131   NR BAL15351.1 278681 g1298 i0 71.3 3.03488372093023 261 71 99.6 2 3 773 168 428 BAL15351.1 translation elongation factor 2, partial [Olpidium bornovanus] diamond 2349 394 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium bornovanus
27205812 27205812 PRJNA577580_P_NODE_10542_length_283_cov_1.242857_g10464_i0 PRJNA577580 10542 283 1.242857 3.51728531 Olpidium bornovanus 278681 Fungi Fungi 151 1.2e-40   NR BAL15351.1 278681 g10464 i0 74.2 3.9434628975265 93 24 98.6 0 3 281 128 220 BAL15351.1 translation elongation factor 2, partial [Olpidium bornovanus] diamond 1116 151 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium bornovanus
29006425 29006425 PRJNA577580_P_NODE_12088_length_266_cov_1.756477_g12010_i0 PRJNA577580 12088 266 1.756477 4.67222882 Olpidium bornovanus 278681 Fungi Fungi 69.3 5.65e-12   NR KAG5458245.1 278681 g12010 i0 45.2 0.823308270676692 73 36 77.8 2 222 16 142 214 KAG5458245.1 MAG: MIR motif-containing protein [Olpidium bornovanus] diamond 219 69.3 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium bornovanus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;