RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA577580", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 3 ✖

tax_clade 1

  • delta/epsilon subdivisions · 3 ✖

bioproject 1

  • PRJNA577580 · 3 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28546138 28546138 PRJNA577580_P_NODE_15167_length_246_cov_2.398844_g15089_i0 PRJNA577580 15167 246 2.398844 5.90115624 Bacteria 2 Bacteria Bacteria 107 3.53e-25   NR RTZ80055.1 2024889 g15089 i0 59.3 7.95121951219512 81 33 98.8 0 244 2 325 405 RTZ80055.1 MAG: 4-coumarate--CoA ligase family protein [SAR324 cluster bacterium] diamond 1956 107 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       SAR324 cluster bacterium
30142502 30142502 PRJNA577580_P_NODE_16312_length_242_cov_1.514793_g16234_i0 PRJNA577580 16312 242 1.514793 3.66579906 SAR324 cluster bacterium 2024889 Bacteria Bacteria 68.2 3.99e-11   NR MBF0351230.1 2024889 g16234 i0 43.1 3.66942148760331 72 41 89.3 0 240 25 214 285 MBF0351230.1 Na/Pi cotransporter family protein [SAR324 cluster bacterium] diamond 888 68.2 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       SAR324 cluster bacterium
31293810 31293810 PRJNA577580_P_NODE_1735_length_690_cov_13.987034_g1661_i0 PRJNA577580 1735 690 13.987034 96.5105346 Myxococcota 2818505 Bacteria Bacteria 49.7 0.00177   NR OGQ21893.1 1797862 g1661 i0 26.1 1.46521739130435 161 112 67 4 106 567 7 167 OGQ21893.1 MAG: ATP synthase F1 subunit delta [Deltaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_44_16] diamond 1011 49.7 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_44_16

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;